Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag1517 | ATGGCGGCTCTGGTTCAGGTAGACGAAAGCCCTAGGTGGAAGAAGCTCTTGAGTTACATTGGACCCGGTTTTCTTGTCTCTGTTGCCTACCTTGATCCTGGAAACTTAGAGACTGATTTACAAGCTGGTGCTGCTCACAGATACGAGTTACTGTGGATCGTGCTTGTCGGGCTATTCTTCTCTCTCATAATCCAGTCTCGTTCAGCAAATCTAGGAGTTGCTACAGGGAAGCACCTGGCGGAGCACTGTAGATTGGAGTATCCAAAAGCTGTGAATACATGCCTTTGGATTCTTGCAGAGGTTGCTGTTATAGCGGCAGATATCCCAGAAGTGATAGGCACAGCATTCGCTCTTAAGATCTTGATGCATATACCCATATGGGGTGGTGTCCTCATGGCTGGTGCCAATACTCTACTTCTTCTGGCACTTCAACGTTACGGAATAAGAAAGCTGGAGTTTGTGATAGCAGCTCTAGTTGTGGTAGTGGGCAGCTGTTTCTTCAGCGTGATGGTGGGTGCTAGATCAAGCGTGAGAGGGATAATGAAGGGCCTCTTTGTCCCTAAACTCAACGGACACGGTGCCACTGCTCATGCTATTGCCCTCTTAGGAGCCCTAAACATGCCGCACAATCTTTTCCTCCACTCAGCTCTGGTCATCTCAAGAAAATTCACTCACTCTTTTGAGGGCATCAGGAATGCAAGCAAGTACTTCTTGATTGAAAGCGGCATAGCATTGTTTATCGCATTCCTAATCAATGTAGCTGTCATGTCCGTCTCGGCTAGTGTCTGTTCTCACCCTAAAATCACCCATGAAAACTCCGCCCACTGCAACGACATCACTCTAGACTCTGCCACTTTCTTGCTCAAGAATTCACTTGGGAATTGGAGCGCAACACTATATGCCATATCATTGCTCGCCTCAGGCCAGAGTTCCACTGTTACGGGAACCTACGCAGGCCAGTACATTATGCAGGGGTTTCTAGATTTGAAAATGAAGCTCTGGTTGAGAAATTTACTTACAAGGCTCGTTTCCATTGCTCCGAGTCTTATTGCCTGCATCATTGGAGGATCTTCTGGAGCAGCACGGCTAATCATCATCGCTTCTATGATTCTTTCATTTGAGCTTCCGTTTGCGTTAATTCCTCTGCTTAGGTTTACGAGCAGTGAAGCAAAGATGGGTCCCCACCGGAACTCTGCTATGGTTATTCTAGTCTCATGGTTCTTGGGGCTTTGCTCGATTGGTATCAACCTGTACTTCTTAAGCACTGCAGGGATAGGATGGATGACAAATACACATCTGCCCAAAACAGGGTCGATCTTAATAGCAGTGGTGGTTTTTCCCATTATGATGCTTTATGTTGCCCTGCTGATATACTTGACCACCAAAAAGGGATCATCTGCTGATATCTCCATGGAATTTGAGATTAGTAGCATGCAATCAGATGGAATAAGAGCAGACCAGAGGTCTATTAAATCTAGCAGTAGCCCCCCTGGAGAGAATGAAATAGAAGTGGATGGCATTGTTAATGCATAA | 1533 | 46.18 | MAALVQVDESPRWKKLLSYIGPGFLVSVAYLDPGNLETDLQAGAAHRYELLWIVLVGLFFSLIIQSRSANLGVATGKHLAEHCRLEYPKAVNTCLWILAEVAVIAADIPEVIGTAFALKILMHIPIWGGVLMAGANTLLLLALQRYGIRKLEFVIAALVVVVGSCFFSVMVGARSSVRGIMKGLFVPKLNGHGATAHAIALLGALNMPHNLFLHSALVISRKFTHSFEGIRNASKYFLIESGIALFIAFLINVAVMSVSASVCSHPKITHENSAHCNDITLDSATFLLKNSLGNWSATLYAISLLASGQSSTVTGTYAGQYIMQGFLDLKMKLWLRNLLTRLVSIAPSLIACIIGGSSGAARLIIIASMILSFELPFALIPLLRFTSSEAKMGPHRNSAMVILVSWFLGLCSIGINLYFLSTAGIGWMTNTHLPKTGSILIAVVVFPIMMLYVALLIYLTTKKGSSADISMEFEISSMQSDGIRADQRSIKSSSSPPGENEIEVDGIVNA | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11979193 | 11982434 | - | Conep06aG0157600.1 | Cone6ag1517 | 440401 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag1517 | 510 | NCBIfam | Nramp family divalent metal transporter | 21 | 389 | - | - | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 123 | 142 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 308 | 327 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 198 | 221 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 336 | 353 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 95 | 121 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 148 | 169 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 368 | 387 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 14 | 391 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | MobiDBLite | consensus disorder prediction | 481 | 499 | - | - | |
| Cone6ag1517 | 510 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 7 | 469 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | MobiDBLite | consensus disorder prediction | 481 | 510 | - | - | |
| Cone6ag1517 | 510 | Pfam | Natural resistance-associated macrophage protein-like | 37 | 398 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone6ag1517 | 510 | Hamap | Divalent metal cation transporter MntH [mntH]. | 2 | 424 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0432 | Cone-Chr20:2151827 | Cone6ag1517 | Cone-Chr6:11979193 | 1.19E-208 | dispersed | |
| Cone20ag1143 | Cone-Chr20:7778748 | Cone6ag1517 | Cone-Chr6:11979193 | 1.19E-181 | dispersed | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone6ag1517 | Cone-Chr6:11979193 | 6.73E-97 | dispersed | |
| Cone6ag1430 | Cone-Chr6:11472817 | Cone6ag1517 | Cone-Chr6:11979193 | 5.47E-95 | dispersed | |
| Cone6ag1517 | Cone-Chr6:11979193 | Cone9ag1360 | Cone-Chr9:10187459 | 6.24E-98 | dispersed | |
| Cone6ag1517 | Cone-Chr6:11979193 | Cone17ag0270 | Cone-Chr17:1273309 | 1.59E-186 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag1517 | K21398 | - | vvi:100262929 | 720.309 |