Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1530 ATGATGGCGAGGGAGAAGATTAAGATAAAGAAGATAGACAACACCACGGCGAGACAGGTCACCTTCTCAAAGCGGCGGCGCGGTTTGTTCAAGAAGGCTGAGGAGATATCCGTTCTCTGTGATGCTGATATTGCCCTCATCGTCTTCTCCTCCACTGGAAAGCTCTTTGAATACTCCAGCTCAAGTATGAAGGAAATTATAGAGAGGCATAATTTGCACCCTAGGAACATCCAGAAGTTGCAACAACCATCACTTGAGTTGCAGTTAGTAGAAAACAGCAACCGCTCTAGGCTGAACCAGGAAATTGCAGAGAAAAGTCATCAATTAAGGCAGATGAGGGGAGAGGAGCTCCAAGAACTGACTATAGAACAACTGCAGCAGCTCGAGAAATCCCTCGAATCGGGCTTAACCCGTGTCATTGAGAAAAAGGGTGCAAAGATTATGAAAGATATCGCTGATCTCCAAACAAAGGTCCAGACACTTGGTATGGAATTGATGGAAGAGAACGACCGATTAAGACAGCAAGTAATCATCTCTAATCTGTGA 546 45.05 MMAREKIKIKKIDNTTARQVTFSKRRRGLFKKAEEISVLCDADIALIVFSSTGKLFEYSSSSMKEIIERHNLHPRNIQKLQQPSLELQLVENSNRSRLNQEIAEKSHQLRQMRGEELQELTIEQLQQLEKSLESGLTRVIEKKGAKIMKDIADLQTKVQTLGMELMEENDRLRQQVIISNL 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12035959 12039423 - Conep06aG0158900.1 Cone6ag1530 440414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1530 181 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 175 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone6ag1530 181 FunFam Transcription factor, MADS-box 14 84 - -
Cone6ag1530 181 Pfam K-box region 94 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag1530 181 Coils Coil 151 171 - -
Cone6ag1530 181 Coils Coil 95 115 - -
Cone6ag1530 181 ProSiteProfiles K-box domain profile. 88 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag1530 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone6ag1530 181 SUPERFAMILY SRF-like 4 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 Gene3D - 14 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1530 181 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1138 Cone-Chr18:8203087 Cone6ag1530 Cone-Chr6:12035959 1.49E-09 dispersed
Cone20ag0555 Cone-Chr20:3087265 Cone6ag1530 Cone-Chr6:12035959 4.56E-56 dispersed
Cone6ag1530 Cone-Chr6:12035959 Cone8ag1021 Cone-Chr8:9485806 1.58E-43 dispersed
Cone13ag0950 Cone-Chr13:8150653 Cone6ag1530 Cone-Chr6:12035959 4.64E-15 transposed
Cone12ag0994 Cone-Chr12:8469668 Cone6ag1530 Cone-Chr6:12035959 1.52E-39 wgd
Cone4ag1298 Cone-Chr4:10714434 Cone6ag1530 Cone-Chr6:12035959 1.28E-59 wgd
Cone6ag1530 Cone-Chr6:12035959 Cone7ag0856 Cone-Chr7:6546748 3.03E-63 wgd
Cone6ag1530 Cone-Chr6:12035959 Cone9ag1445 Cone-Chr9:10720623 5.14E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46410 PF02714 RSN1_7TM 1.10E-79 CL0416 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1530 - - - 0.0