Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1538 ATGGCAGAAAGTTCTTATGGTGCCAACTTAGACCTTCTCTGTGATGAAGATGCAGATATCTGCCATGATGCGTTTTGGCACCATCAAGAACTGAGCTTTGACAACCTTGGTGAATCAGCATCTGTAAAAGTCCTGTTGCAAAGTGAAGAGAGAGTGAAAGAAATGGTTGAGAGAGAGAGGGAGCATTTGCCTAGAGATGATTACTTAAAGAGATTGCGTAGTGGAGACTTGGATTTGAGCTTTAGAAGAGAGGCCATTGATTGGATTTTCAAGGTTTATACTCATTTCAGCTTTAGACCACTATGCATCTCTTTAGCCGTGAACTACTTGGATCGGTTTCTTTCGACTTATCAATTGCCTAGGGGCAAAAGTTGGAGTGTACAATTAGCATCTGTAGCTTGTTTATCATTAGCAGCCAAGATGGAGGAGAAAAATGTTCCGAAATATGTAGATCTTCAGGTGGGAGAACCCATATTTGTTTTCGAGTCTAAATCGATTGGGAGAATGGAGTCTCTCGTGTTGAACACATTGAAATGGAAAATGCAAGCTATTACACCTTGCTCTTATATCGACTACTTCCTAAGCAAGAACTTGGACATTGATCTTCATCATAGTTCCTTGAAACTTTCTTTATCTAAGTCGGTCCAACTCATATTGAGCATGATAAAAGGTATTGATTTCTTGGAATTCAGACCTTCTGAAATTGCTGCAGCTGTAGCAATTTTGATTTCAGGAGAGATCGAAGCACTAGAAAGGGATAAGGAAAATCCATGTTTTGTACATGTTGAGAAGGGGAGAGTGATGAAGTGTGTGGAGTTGATCAAGGATTTCTCGTTGATCACCAGGATGGGGAATCGGGTTTTGGGCTCAGAAAGCCCGGCGGGAGTTTTGGATGCTGCGTGTTTGAGCTATAAAAGTGATGAATTAACAACAGTTGGGTCATGTGCAAATTCTTCACATGGTAAGAGGGAGAGAGAGAAGTAA 984 40.96 MAESSYGANLDLLCDEDADICHDAFWHHQELSFDNLGESASVKVLLQSEERVKEMVEREREHLPRDDYLKRLRSGDLDLSFRREAIDWIFKVYTHFSFRPLCISLAVNYLDRFLSTYQLPRGKSWSVQLASVACLSLAAKMEEKNVPKYVDLQVGEPIFVFESKSIGRMESLVLNTLKWKMQAITPCSYIDYFLSKNLDIDLHHSSLKLSLSKSVQLILSMIKGIDFLEFRPSEIAAAVAILISGEIEALERDKENPCFVHVEKGRVMKCVELIKDFSLITRMGNRVLGSESPAGVLDAACLSYKSDELTTVGSCANSSHGKREREK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12087182 12089303 + Conep06aG0159800.1 Cone6ag1538 440422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1538 327 Pfam Cyclin, C-terminal domain 184 278 IPR004367 -
Cone6ag1538 327 CDD CYCLIN_AtCycD-like_rpt1 82 179 - -
Cone6ag1538 327 Gene3D - 53 271 - -
Cone6ag1538 327 Pfam Cyclin, N-terminal domain 52 181 IPR006671 -
Cone6ag1538 327 SUPERFAMILY Cyclin-like 46 181 IPR036915 -
Cone6ag1538 327 FunFam D6-type cyclin 178 272 - -
Cone6ag1538 327 CDD CYCLIN_AtCycD-like_rpt2 184 274 - -
Cone6ag1538 327 Gene3D - 65 182 - -
Cone6ag1538 327 SMART Cyclin_C_2 184 318 IPR004367 -
Cone6ag1538 327 FunFam D2/4-type cyclin 65 177 - -
Cone6ag1538 327 ProSitePatterns Cyclins signature. 82 113 IPR048258 -
Cone6ag1538 327 SMART cyclin_7 87 175 IPR013763 -
Cone6ag1538 327 PANTHER CYCLINS 49 259 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1538 Cone-Chr6:12087182 Cone8ag1114 Cone-Chr8:9891151 7.94E-39 dispersed
Cone17ag1189 Cone-Chr17:8708758 Cone6ag1538 Cone-Chr6:12087182 1.46E-81 wgd
Cone20ag0545 Cone-Chr20:3036345 Cone6ag1538 Cone-Chr6:12087182 1.37E-85 wgd
Cone4ag1308 Cone-Chr4:10767744 Cone6ag1538 Cone-Chr6:12087182 1.02E-93 wgd
Cone6ag1538 Cone-Chr6:12087182 Cone7ag0848 Cone-Chr7:6444069 2.42E-93 wgd
Cone6ag1538 Cone-Chr6:12087182 Cone9ag1454 Cone-Chr9:10785867 1.84E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1538 K18810 - rcu:8267059 360.147