Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1543 ATGTCTCATCGGGAGGAGGAAGATGGAGGAGAAGAAGAAAAAAAATCTGCTTTTTGTAGCATGTCTCATCTGGAGGAGGAAGGAGGAGGAGAAGGAATGGATGTTCCCTTATTGTCGGATAAGGCCGATGATGATGATGATCTGGGCGTTGGAAGAAGATTCTGGGTCGAATTAACGAAGCTGTGGAAAGTAGTTGGACCAGCAATCGTGAGCAAGCTCGTGACATACGCCACTTTTGTCATCACTCAAGCTTTCGCCGGCCATTTGGGTGAACTCCAGCTCGCCGCTATTTCCATCGTAAATAATGTCATCCTCGGCTTTGACCAAGGCCTCTTGTTGGGGATGGCAAGTGCTCTAGAGACATCATGCGGACAAGCGTTCGGGGCAAAGAAATATTACATGTTGGGCATATATTTACAGCGTTCATGGGTTATTCTATTTTCATGTTGCATTTTGTTTATACCCGTTTTTATTTTTGCCGGTCCCATTTTCGAGCTTTTAGGGCAATCGGCCGACTTGTCGGAGTTAGTAGGGAGCGTGGCAGTTTGGTTTCTTCCCGTTCATTTCTGCTTCGCCTTCCTCTTTCCTTTGCAGAGATTCTTACAGACTCAGATAAGGAATAGGGTCATAATGTATGTGTCGGTTTTGGCACTCCTTGTGCATGTGTTTGTGAGTTGGTTGTTTATTTCTAAGCTCAACCTTGGAGTGTATGGTTGTGCTCTTACATTGAGCATTTCTTGGTGGCTTATTGGACTTGGGCTTTTTGGTTATGTTGTTTGTGGAGGCTGTCCTAATACTTGGATTGGTTTCTCCATTGAAGCTTTCTCTGGTCTTTGGGAGTACACTAATCTCTCTCTTGCTTCTGGGGTCATGATATGTTTGGAGAATTGGTACTATAGAATTTTGTTGTTGATGACCGGAAGTTTTGCGGATGCTGAGGTCATCGTGGACGCCTTATCTATCTGTATGACCATCAATGCCTGGGAGATGACAATTCATCTGGCATTCTTTGCCGGTACTGGAGTACGGGTTTCAAATGAGCTCGGAGCGGGAAATGGAAGAGGAGCCAAGTTTGCAGCAATTGTTTCCGTGACAACATCACTATTCATAGGCACCTTCTTCTGCTTGTTAATTCTCATATTTCATAACGATTTTGCCGCCATTTTTTCCGATTCGGAATCAGTCATCCAAGAAGTCGACAGCCTTTCCACTCTCTTAGCATTCAGCATTCTCCTCAACAGCGTCCAACCCATTCTTTCTGGAGTTGCGGTGGGGTCCGGTCGGCAAAAATATGTGGCCTACATAAACTTGGGATGCTATTACATTTTGGGACTGCCATTAGGAATGTTGATGGGCTGGGTCTTCAACTTTGGCATTAAGGGAATTTGGGCTGGAATGATTTGTGGTGGAACTGCAATGCAAACTTTGATCATGATCATCTTCACCGTCCGATGCGACTGGGAAAAAGAGGCAGAGAAAGCATGCAGCCGCGTAAAGAGATGGTCCGAAACAGTTGAACCTGAAAGAAATTGA 1533 45.08 MSHREEEDGGEEEKKSAFCSMSHLEEEGGGEGMDVPLLSDKADDDDDLGVGRRFWVELTKLWKVVGPAIVSKLVTYATFVITQAFAGHLGELQLAAISIVNNVILGFDQGLLLGMASALETSCGQAFGAKKYYMLGIYLQRSWVILFSCCILFIPVFIFAGPIFELLGQSADLSELVGSVAVWFLPVHFCFAFLFPLQRFLQTQIRNRVIMYVSVLALLVHVFVSWLFISKLNLGVYGCALTLSISWWLIGLGLFGYVVCGGCPNTWIGFSIEAFSGLWEYTNLSLASGVMICLENWYYRILLLMTGSFADAEVIVDALSICMTINAWEMTIHLAFFAGTGVRVSNELGAGNGRGAKFAAIVSVTTSLFIGTFFCLLILIFHNDFAAIFSDSESVIQEVDSLSTLLAFSILLNSVQPILSGVAVGSGRQKYVAYINLGCYYILGLPLGMLMGWVFNFGIKGIWAGMICGGTAMQTLIMIIFTVRCDWEKEAEKACSRVKRWSETVEPERN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12118169 12120977 + Conep06aG0160300.1 Cone6ag1543 440427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1543 510 MobiDBLite consensus disorder prediction 1 21 - -
Cone6ag1543 510 CDD MATE_eukaryotic 57 493 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone6ag1543 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 52 490 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone6ag1543 510 MobiDBLite consensus disorder prediction 1 33 - -
Cone6ag1543 510 Pfam MatE 67 227 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone6ag1543 510 Pfam MatE 289 449 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone6ag1543 510 NCBIfam MATE family efflux transporter 67 463 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1543 K03327 - - cit:102628773 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1543 Cone-Chr6:12118169 Cone7ag1795 Cone-Chr7:11763816 2.01E-154 dispersed
Cone10ag0528 Cone-Chr10:2438611 Cone6ag1543 Cone-Chr6:12118169 3.46E-175 transposed
Cone17ag1199 Cone-Chr17:8759756 Cone6ag1543 Cone-Chr6:12118169 1.01E-196 wgd
Cone20ag0535 Cone-Chr20:2934404 Cone6ag1543 Cone-Chr6:12118169 2.46E-189 wgd
Cone4ag1315 Cone-Chr4:10806673 Cone6ag1543 Cone-Chr6:12118169 3.90E-212 wgd
Cone6ag1543 Cone-Chr6:12118169 Cone8ag0208 Cone-Chr8:1120557 1.93E-228 wgd
Cone6ag1543 Cone-Chr6:12118169 Cone9ag1458 Cone-Chr9:10812450 1.22E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129