Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1562 ATGGCGACCCTTAATGTTCCTGCATCGGTTCCTTCTCCGGCGGAAGACGCAGAGCAGCTCCAGAAAGCATTCAAAGGATGGGGAACGAACGAAGCATTGATCATATCCATATTATCCCACAGAAATGCAGGTCAACGAAACGCAATCCGAAAAGCTTATGCCGAAGCTTATAACGAAGATCTCCTGAAAGAGCTTGATATAGAACTCTCTAGTGACTTTGAGAGAATCATACTGTTATGGACGTTTGAACCGGCCGAGCGAGATGCGTTCCTGGCTTACGAATCAACAAAACGTTCGACTTTTAGCTACTGGGTCATCCTAGAAATAGCCTCTACTAGATCTTCGATCGATCTTTTCAAGGTGAAGCAAGCATATCATTTCCGCTTCAAGAAATCTCTTGAAGAAGATGTTGCTCATCGGACAACGGGAGATTTCCGTAAGCTTCTGGTTCCTCTTGTGAGTGCATTTAGATACGAGGGAGATGAAGTGAACCTGACATTGGCAAAATCTGAAGCTAAAATACTTCGTGAGGAGATTTCTGATAAGAAGTATAATGATGAGGAGCTGATAAGGATTGTGACTACAAGGAGCAAAGCCCAGCTCAATGCAACTCTCAATGCGTACAACAATGAGTTTGGAAATGCTATTAACAAGGATATGAAAACTGATCCGAAAGATGAGTATCTGCAATTGCTTAGGGCAGCTTTCAAGTGCTTGACCTGCCCGGAGAAGTACTTTGAGAAAGTTCTGAGGCTGGCTATTAACAGGCTGGGGACAGATGAGTGGGCCCTGACTCGAGTCGTTGCGACTCGAACCGAGGTGGATATGAAACGGATCAAGGAAGAGTATCATCGTAGAAACAGCATTCCGCTTCATACAGCAATAGCTAAGGATACTTCTGGTGACTATGAGAAGATGCTTCTTGAGCTGGTTGGAAATGAGAATGCTTGA 951 44.37 MATLNVPASVPSPAEDAEQLQKAFKGWGTNEALIISILSHRNAGQRNAIRKAYAEAYNEDLLKELDIELSSDFERIILLWTFEPAERDAFLAYESTKRSTFSYWVILEIASTRSSIDLFKVKQAYHFRFKKSLEEDVAHRTTGDFRKLLVPLVSAFRYEGDEVNLTLAKSEAKILREEISDKKYNDEELIRIVTTRSKAQLNATLNAYNNEFGNAINKDMKTDPKDEYLQLLRAAFKCLTCPEKYFEKVLRLAINRLGTDEWALTRVVATRTEVDMKRIKEEYHRRNSIPLHTAIAKDTSGDYEKMLLELVGNENA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12213775 12215397 + Conep06aG0162400.1 Cone6ag1562 440446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1562 316 Gene3D Annexin 1 82 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 FunFam Annexin 1 82 - -
Cone6ag1562 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Gene3D Annexin 83 154 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 ProSiteProfiles Annexin repeat profile. 241 312 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 FunFam Annexin 83 153 - -
Cone6ag1562 316 Gene3D Annexin 241 316 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Coils Coil 198 218 - -
Cone6ag1562 316 FunFam Annexin 166 240 - -
Cone6ag1562 316 FunFam Annexin 241 313 - -
Cone6ag1562 316 ProSitePatterns Annexin repeat signature. 258 310 IPR018252 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 PRINTS Plant annexin signature 226 244 IPR009118 -
Cone6ag1562 316 PRINTS Plant annexin signature 161 181 IPR009118 -
Cone6ag1562 316 PRINTS Plant annexin signature 119 133 IPR009118 -
Cone6ag1562 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 PRINTS Annexin family signature 298 311 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 PRINTS Annexin family signature 254 274 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 SMART annex3 28 80 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 SMART annex3 100 152 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 SMART annex3 185 231 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 SMART annex3 258 310 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Gene3D Annexin 165 240 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 SUPERFAMILY Annexin 2 314 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 PANTHER ANNEXIN 6 312 - GO:0005509(PANTHER)|GO:0005737(PANTHER)|GO:0005829(PANTHER)
Cone6ag1562 316 ProSiteProfiles Annexin repeat profile. 166 237 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Pfam Annexin 88 152 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Pfam Annexin 16 79 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Pfam Annexin 171 233 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cone6ag1562 316 Pfam Annexin 245 310 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1562 K17098 - - rcu:8269057 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0962 Cone-Chr12:8343257 Cone6ag1562 Cone-Chr6:12213775 5.82E-33 wgd
Cone4ag1343 Cone-Chr4:10963655 Cone6ag1562 Cone-Chr6:12213775 8.48E-144 wgd
Cone6ag1562 Cone-Chr6:12213775 Cone7ag1588 Cone-Chr7:10866744 8.49E-139 wgd
Cone6ag1562 Cone-Chr6:12213775 Cone9ag1482 Cone-Chr9:10918173 1.98E-204 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1562 Cone9ag1482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001965 1 3 3 2 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 2 2 2 2 2 2 1 3 2 1 66