Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1580 ATGGCTTCTTCAGATCACGTGCTTGATCTCGAGAAGATCAACAGCCGTGCCGAGAGGGCACAGTGGGTCATGGACGCCCCCAAGCCGCCCACTTTATGGCATGAGCTCAAGGATTCACTTGGAGAAACCATCTTTCCTAATGCGAAAGGTGTCTTATCAAAAAATCAAAGTGCAAGAAAGTGGTTGGTTTCTTTACTTCAAGAGATCTTCCCCATCCTTTATTGGTGCCGGAATTACAAAGCTACAAAATTCAAGAATGATTTACTAGCTGGTCTCACTCTTGCCTGCATTTGTATTCCCCAGAGTATTGGATATGCAACTTTGGCAAAGCTTGAACCACAATATGGCTTGTATACAAGCGTGGTCCCACCGCTTATTTATGCCATAATGGGAACCTCTAGAGAGATCGCGATTGGACCGGTGGCCATCGTTTCGCTACTTTTGCCGTCAATGATACAAAAACTACAAGATCCAACGGCCGATCCAATTTCGTACAAAAAACTTGTCTTGACGGCAACTTTCTTCACCGGTGTCTTTCAAGCTGCCTTTGGACTCTTCAGGTTGGGATTTCTTGTGGACTTTCTATCACATGCGGCAATAGTGGGGTTTGTGGGAGGAGCAGCGGTTGTGATTGGTCTTCAACAACTGAAAGGACTACTTGGGATCACTCATTTCACCAACAAAACTGATGTTGTCTCTGTACTCAAAGCTGTCTGGAAATCATTCGAACATCATCCTTGGAATCCCACCAATTTTATCCTCGGTTGCTCATTTTTTTCCTTTATTCTGATCACTAGGCTTCTGGGTAAAAAATACAAGAAACTTTTCTGGTTGCCAGCAATTTCACCTCTATTATCTGTGACACTGTCAACCCTTATAGTTTACTTAACAAGAGCAGATAATCATGGGGTCAAAATAGTGAAACACATTCATGGAGGGTTGAATCCAAGCTCCATTCATCAGTTACAATTTGATAGTCCTGTTGTTGGAGAAATTGCTAAAATCGGATTGGTTGTTGCCGTCGTTGCTCTCACTGAAGCTATTGCGGTTGGCCGATCATTTGCATCGATAAAAGGATATCATTATGATGGGAACAAAGAAATGCTGGCCATGGGAGTGATGAATGTAGCCGGCTCTTTCACTTCTTGCTATGTTGCCACTGGTTCATTTTCACGCACCGCCGTGAACTTCAGCGCTGGGTGCGAGACAGTTGTGTCGAACATAGTGATGGCTATAACGGTGTTGATATCGCTGGAGTGTTTAACAAGGCTATTGTACTACACTCCAACAGCTATAATTGCCTCAATAATTCTTTCCGCTCTTCCGGGACTCATCGACCTCAATGAAGCTTATAACATTTGGAAGGTCGACAAGCTTGACTTTGTTGCTTGCATAGCCGCCTTCTTCGGGGTGTTGTTTGTATCCGTCGAGATTGGTCTACTTGCCTCGGTGATCATATCATTTGCAAAGATACTACTTATCTCAATTCAACCAGGGACCGAGACTCTCGGAAAAATTCCCGGAACTGACGTGTTTGGTGATGTTGATCAATATCCTATGTCTATTAAAATTCCCGGCATTCTCATTGTCCGTGTTAAGTCTTCGTTGCTTTGCTTTGCAAATGCTAATTTTGTTAAAGAAAGAATTCTGAGATGGCTGAGTGATCAAGAACATGTACAAGATGGTGACCCTAAAGGAAGCTCCAAGACAACTATCCATCTTGTAATATTTGACATGTCAAATTTGATGAACGTCGATACATCCGGAGTTGGTGCTTTGGATGAATTGCACAAGAATTTGGTTTCCCAGAGAATCGAGTTAGCCGTTGTGAATCCAAAGTGGCAAGTGATTCACAAGCTGAAGACCGCAAATTTTGTAGCAAAACTTGGAGGAAACTTCTTCTTGACTGTTTCAGAAGCTATGGATGCTTTCCTTGGTGCCAACATGTCTACCATCTAA 1959 43.08 MASSDHVLDLEKINSRAERAQWVMDAPKPPTLWHELKDSLGETIFPNAKGVLSKNQSARKWLVSLLQEIFPILYWCRNYKATKFKNDLLAGLTLACICIPQSIGYATLAKLEPQYGLYTSVVPPLIYAIMGTSREIAIGPVAIVSLLLPSMIQKLQDPTADPISYKKLVLTATFFTGVFQAAFGLFRLGFLVDFLSHAAIVGFVGGAAVVIGLQQLKGLLGITHFTNKTDVVSVLKAVWKSFEHHPWNPTNFILGCSFFSFILITRLLGKKYKKLFWLPAISPLLSVTLSTLIVYLTRADNHGVKIVKHIHGGLNPSSIHQLQFDSPVVGEIAKIGLVVAVVALTEAIAVGRSFASIKGYHYDGNKEMLAMGVMNVAGSFTSCYVATGSFSRTAVNFSAGCETVVSNIVMAITVLISLECLTRLLYYTPTAIIASIILSALPGLIDLNEAYNIWKVDKLDFVACIAAFFGVLFVSVEIGLLASVIISFAKILLISIQPGTETLGKIPGTDVFGDVDQYPMSIKIPGILIVRVKSSLLCFANANFVKERILRWLSDQEHVQDGDPKGSSKTTIHLVIFDMSNLMNVDTSGVGALDELHKNLVSQRIELAVVNPKWQVIHKLKTANFVAKLGGNFFLTVSEAMDAFLGANMSTI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12317946 12322004 + Conep06aG0164200.1 Cone6ag1580 440464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1580 652 ProSiteProfiles STAS domain profile. 537 644 IPR002645 -
Cone6ag1580 652 Gene3D STAS domain 497 645 IPR036513 -
Cone6ag1580 652 Pfam Sulfate permease family 84 467 IPR011547 GO:0016020(InterPro)
Cone6ag1580 652 Pfam STAS domain 519 640 IPR002645 -
Cone6ag1580 652 PANTHER SULFATE TRANSPORTER 56 642 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag1580 652 FunFam Sulfate transporter 31 497 646 - -
Cone6ag1580 652 NCBIfam sulfate permease 71 639 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone6ag1580 652 SUPERFAMILY SpoIIaa-like 523 644 IPR036513 -
Cone6ag1580 652 CDD STAS_SulP_like_sulfate_transporter 518 637 - -
Cone6ag1580 652 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0475 Cone-Chr20:2541111 Cone6ag1580 Cone-Chr6:12317946 5.26E-284 dispersed
Cone6ag1580 Cone-Chr6:12317946 Cone7ag0674 Cone-Chr7:3672639 4.11E-162 dispersed
Cone20ag0474 Cone-Chr20:2524751 Cone6ag1580 Cone-Chr6:12317946 3.25E-170 wgd
Cone4ag1354 Cone-Chr4:11038032 Cone6ag1580 Cone-Chr6:12317946 6.52E-207 wgd
Cone6ag1580 Cone-Chr6:12317946 Cone7ag1578 Cone-Chr7:10808977 9.32E-222 wgd
Cone6ag1580 Cone-Chr6:12317946 Cone9ag1499 Cone-Chr9:11017937 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1580 K17469 - rcu:8265600 930.628