Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1592 ATGACAGAAAAATTACGGGCAGTCATTCACCAGTACCCGCTGTCCCTCTCTCTCTCCCTTTCCCCTCAAACCCCTGATGTTTTCATTATCTCGCTCTCTCTCTATCTACGATCTAAATCGACGGTCCAAAATGAACGCAGTCCAGATTCTTGTTTCCTGAGGTGTCTGATTGCCGGACAAATGGAAATAAGCCACGGTTCAGTTGGTGTTACGCCGCTGGCTCACGGCGCGCTGACTTGCGCCAATGACGCTTTAGCGGCTTTACTGGTCTCAGCTCTGATCAAAAGCCAGCTTTTCGTCCTGGATCTCTTTGAGCTGTTTCTGATCAGCAAGAGCGGGACCAAAGGAGACAATCCGGAGCAATGCCAGCCCGGCGATGCAGGGGAAGATAACGACGACGACGATGATGATGGCGGTTTGGGAGAAGAAGGGCATGATGGTCCAAATCCAAAAAGTCTGTTCTCTTCCTCCCTTAACGGCGAATGTCCTCAGAGGCTTCGGAAACGTAGAAAAGTCGTTTTGAGAGCAACCAGTACAGTAGGCAGGTTTTACAATTTTTCAATGGCGGATCCCTCCGACTCCTCGCCGCTCGTCGCTCCGGTGCCGGTCATCGAAGCTCGCGAGATCGATCTCGAAGCTGGCCCTGGAGAGCAAATTCAATGCAGAATTTGCCTTGAGACAGATGGTAGGGATTTTATAGCTCCCTGCAAGTGCAAAGGAACATCAAAGTATGTTCATCGGGAATGTTTGGATCATTGGCGAGCAGTGAGGGAAGGGTTTGCATTTGCTCATTGTACCACCTGCAAGGCCCCTTACTATTTGAGAGTTCACGCTGTTGCTGATAGGAAATGGCGAACTCTGAAGTTTCGATTTTTTGTGACGAGAGACATTATATTCATATTTCTTATGGTTCAGATGGTAATCACTTCACTCGCATATTTGGTGTATCTAATAGATGGTTACAAAGAGTACTGGCTTCGCCATGCATGGAGTTTTGATAGTGAACTTAGTTTCTACTACATTTGTGGAGCGCTATTGTTTTTTGCTTTGCTTGGGCTATCCGGGTGCTTCATCACATGTTATGATAGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTCGAGAATTATGTCTTTGTTGCTGCCACCCTGGAGTATGTGCAGACTGTCATTTACCCGGCACTCTATGTATGTGGACCGACTGTACCACGTGCTTTGAAAGCTGTGCAAGTATGGGAACTGAATGTGGATGCCTAGGAGGAGCTGGTGAAGCTGGGCTGCCCTTGCTATTTATAATGGCTTTGATTGTGCTCGTCCTTTTTACAGTGATCGGAATATTCTATAGTGTCTTAGTCGCAACTATGGTCGGCCAAAGGATCTGGCAACGGCACTATCACATTCTTGCCAAAAGGATGCTAACAAAAGAATATGTGGTTGAAGATGTAGATGGTGAGATGGCAGGATCTGATTGGTTACCTCCTCCATTGCCGCCCGAGCATGTTCAACAGCTGAAAAACCTTGGCCTTCTATGA 1530 47.25 MTEKLRAVIHQYPLSLSLSLSPQTPDVFIISLSLYLRSKSTVQNERSPDSCFLRCLIAGQMEISHGSVGVTPLAHGALTCANDALAALLVSALIKSQLFVLDLFELFLISKSGTKGDNPEQCQPGDAGEDNDDDDDDGGLGEEGHDGPNPKSLFSSSLNGECPQRLRKRRKVVLRATSTVGRFYNFSMADPSDSSPLVAPVPVIEAREIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYYLRVHAVADRKWRTLKFRFFVTRDIIFIFLMVQMVITSLAYLVYLIDGYKEYWLRHAWSFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTTCFESCASMGTECGCLGGAGEAGLPLLFIMALIVLVLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMAGSDWLPPPLPPEHVQQLKNLGLL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12370439 12375803 - Conep06aG0165400.1 Cone6ag1592 440476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1592 509 SMART ringv_2 220 269 IPR011016 GO:0008270(InterPro)
Cone6ag1592 509 MobiDBLite consensus disorder prediction 115 159 - -
Cone6ag1592 509 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 200 508 - -
Cone6ag1592 509 MobiDBLite consensus disorder prediction 126 141 - -
Cone6ag1592 509 Pfam RING-variant domain 221 268 IPR011016 GO:0008270(InterPro)
Cone6ag1592 509 ProSiteProfiles Zinc finger RING-CH-type profile. 213 275 IPR011016 GO:0008270(InterPro)
Cone6ag1592 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 281 IPR013083 -
Cone6ag1592 509 CDD RING_CH-C4HC3_MARCH 221 269 - -
Cone6ag1592 509 SUPERFAMILY RING/U-box 217 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0696 Cone-Chr4:3554211 Cone6ag1592 Cone-Chr6:12370439 1.37E-62 dispersed
Cone6ag1592 Cone-Chr6:12370439 Cone7ag0656 Cone-Chr7:3420822 1.28E-61 dispersed
Cone9ag1514 Cone-Chr9:11076106 Cone6ag1592 Cone-Chr6:12370439 7.84E-27 transposed
Cone6ag1592 Cone-Chr6:12370439 Cone9ag1513 Cone-Chr9:11069236 4.77E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1592 - - - 0.0