Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1607 ATGGGGACAAGAGAAGAGGCTACTCCTCCTAAGACTACCAGACCAGCCTCTTCATCTCAGGAAATTCCGACAACACCTTCATATCCCGATTGGTCCAGCTCGATGCAGGCTTATTATGGAGCCGGTGCGACCCCACCTCCGTTTTTTGCATCAACTCCAAGTCCCCACCACTATATGTGGGGAGGCCAGCATCCTTTGATTCCCCCATATGGGACCCCTGTCCCATATACAGCTATATATCCTCCGGGTGGAGTTTTTGCTCATCCTAACATGACCACGGTTCCACTGTCGGCTCAGACTAACACAGAAACAGAAGGGAAGGTGCCTGATGGAAAGGACAAGGCTTCTGGGAAAAAAACAAAGGGTGGTCAAGGAAATAGTGTGAAGGCGGCACCTTCAGGTTCTGGAAATGATGGTCAAAGTACTGAAAGTGCTACTGAGGGTTCTTCTGATGGTAGCGATGAGAATCCAAACCAACAGGAATTTTCTGCAAGTAAGAAGGGAAGCTTCAACCAGATGCTTGCAGATGGAGCCAATGCACAGAATAGCAGTGCCGGGCCAAACCTTCAATCTTCAGTAACTGGGAAACCCATAGTCCCTATGCCCCCAACCAATCTGAATATAGGAATGGACTTATGGAACTTGGGGGTCGCTGGTTCTGGGCCCGCAAAAGTGAGGCCCAATCAAATGGGTGGTGCCCTTGTCCCGGCACCCCCCGAGCAATGGATTCAAAAGGACGAACGGGAACTGAAAAGACAGAAGAGGAAGCAATCTAATAGGGAGTCGGCCCGTAGGTCACGCCTGCGTAAACAGGCGGAATGTGAAGAGTTACAAGCAAGGGTGGAGGCATTGAGCAATGAGAATATAACTCTTAGAGATGAGTTGCAGGGTCTTTCTGATGAATGTGAGAAGCTTGTATCGGAAAATAGTTCCCTCAAGGAAGAATTGACACAATTGTGTGGACCGGAAGTGGTAAGTAATCTTGAAGACGGAAATCCGAAATCAGCTCTTCAATCTCAAGGTGGTGAAGGCAAAAGCTAA 1041 48.8 MGTREEATPPKTTRPASSSQEIPTTPSYPDWSSSMQAYYGAGATPPPFFASTPSPHHYMWGGQHPLIPPYGTPVPYTAIYPPGGVFAHPNMTTVPLSAQTNTETEGKVPDGKDKASGKKTKGGQGNSVKAAPSGSGNDGQSTESATEGSSDGSDENPNQQEFSASKKGSFNQMLADGANAQNSSAGPNLQSSVTGKPIVPMPPTNLNIGMDLWNLGVAGSGPAKVRPNQMGGALVPAPPEQWIQKDERELKRQKRKQSNRESARRSRLRKQAECEELQARVEALSNENITLRDELQGLSDECEKLVSENSSLKEELTQLCGPEVVSNLEDGNPKSALQSQGGEGKS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12444611 12448204 + Conep06aG0167000.1 Cone6ag1607 440491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1607 346 MobiDBLite consensus disorder prediction 178 198 - -
Cone6ag1607 346 Coils Coil 260 315 - -
Cone6ag1607 346 MobiDBLite consensus disorder prediction 224 272 - -
Cone6ag1607 346 CDD bZIP_plant_GBF1 252 302 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 MobiDBLite consensus disorder prediction 331 346 - -
Cone6ag1607 346 SUPERFAMILY Leucine zipper domain 250 306 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 MobiDBLite consensus disorder prediction 178 200 - -
Cone6ag1607 346 MobiDBLite consensus disorder prediction 99 165 - -
Cone6ag1607 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 312 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 330 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone6ag1607 346 MobiDBLite consensus disorder prediction 323 346 - -
Cone6ag1607 346 MobiDBLite consensus disorder prediction 120 165 - -
Cone6ag1607 346 FunFam BZIP transcription factor 249 300 - -
Cone6ag1607 346 Pfam G-box binding protein MFMR 1 91 IPR012900 -
Cone6ag1607 346 MobiDBLite consensus disorder prediction 10 39 - -
Cone6ag1607 346 SMART brlzneu 247 311 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 MobiDBLite consensus disorder prediction 242 256 - -
Cone6ag1607 346 MobiDBLite consensus disorder prediction 1 45 - -
Cone6ag1607 346 Pfam bZIP transcription factor 247 309 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1607 346 Gene3D - 250 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1039 Cone-Chr18:7655520 Cone6ag1607 Cone-Chr6:12444611 8.00E-35 dispersed
Cone6ag1607 Cone-Chr6:12444611 Cone8ag0496 Cone-Chr8:3532227 4.70E-39 dispersed
Cone6ag1607 Cone-Chr6:12444611 Cone9ag1533 Cone-Chr9:11169867 1.86E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46415 PF00004 AAA 7.90E-36 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1607 K09060 - csv:101217128 477.248