Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1610 ATGCCGAAAGAGTTGGATAACTCCTCCACCGCTTCAGGGGAAGCTAGTCTGTCTCCCTCCGGCTATCAAGCACCGCCACTGCCACCGAAATCTTCCGGCAAGAAAAAGCGGAACCTCCCCGGAATGCCAGATCCGGATGCAGAGGTGATAGCTCTGTCGCCAAAAACTCTATTAGCGACGAACCGATTCGTTTGCGAAATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTCCAGCTTCATCGAAGAGGTCATAACCTGCCATGGAAACTTAGGCAGAGAACGAGCAAGGAGGTGAAGAAGAGGGTCTACGTCTGCCCTGAACCATCCTGTGTTCACCATGATCCGTCTCGAGCTTTAGGTGATCTAACGGGGATTAAAAAGCACTTTTGCAGAAAGCACAGCGAGAAGAAGTGGAAATGCGATAAGTGCTCTAAGAAATACGCCGTTCAGTCCGACTGGAAAGCCCATTCTAAGATTTGCGGCACTAGAGAGTATAAATGCGATTGCGGAACGCTATTTTCCAGGAGGGATAGTTTTATAACGCATAGGGCGTTCTGTGACGCGTTAGCGGAGGAGAGTGCAAAGGCTCAAACGCAACCGGAAACAATGGAGGCGGTGGATCCGAATGCAGAGTTCGACCCGAATGTTATGCCCGTTAGCTCTTCTTCTTCGCCTCCTCCAGCTCAGCAACCGCCAGCTGCTACTACTTCGAAGTCGACTGCTCTTATCGCTTCGGTTTTGCCCATTAGCAGCCAAGAAACCCAACAACTTATTGAAGAAGGACCATCAGCTACTACAGCAACAGGCGTGAATGGGACCTCTAGTAGTAGCCCGAGTTGCAATAGCAGCCCGAGTAGTAGTGTATTTGCAAGCTTATTTGCATCCTCAACTGTCTCACTATCCTTACAACCATCTCGACCCCCTGCATTTACAGACCTAATACAAGCCGTGTCCCATTCAGATCGCCCAACTGACCTCACCCCTCCATCTTCAACCACTGAAGCCATCTCTCTCTGCCTCTCAACCAATCACCACTCATCCATATTCGGGCCTGCCAGCCCAGAAAGGAGGCAATACGCCCCGCCGCCACCACCACCAACTCAACAACAGGCAGCCATTTCCGCCACAGCATTGCTCCAGAAAGCTGCCCAGATGGGAGCTGTGGCAACTAATGCAACATTGCTTCGAGGGTTGGGGGTAGTATCTTCATCTTCTCCATCAGGGCAACAACAAGAGAATACTTTGCAATGGAATCAACGACCGGTGGAACAGGATAATACTTTGGTTCCACCTGGCCTTGGACTTGGGCTTTGTGGTGAAGGGTCTGCTTCTGGGTTGAAAGAATTGATGATGGGAAGTCATTCAATGTTTGGTCCGAAGCAAACCACTCTTGATTTTCTTGGATTGGGAATGGTGGCAGGGGGTAGCCCTAATGGCGGTTTGTCCGCTTTAATTGCATCTATTGGTGGTGGTTTGGATGTTGCTACGGCGGCTGCATCATTCGGAGGGGGTGAATTCTCGGGCAAAGATATGGGTAGGACCTCTTGA 1551 50.48 MPKELDNSSTASGEASLSPSGYQAPPLPPKSSGKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHSEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQTQPETMEAVDPNAEFDPNVMPVSSSSSPPPAQQPPAATTSKSTALIASVLPISSQETQQLIEEGPSATTATGVNGTSSSSPSCNSSPSSSVFASLFASSTVSLSLQPSRPPAFTDLIQAVSHSDRPTDLTPPSSTTEAISLCLSTNHHSSIFGPASPERRQYAPPPPPPTQQQAAISATALLQKAAQMGAVATNATLLRGLGVVSSSSPSGQQQENTLQWNQRPVEQDNTLVPPGLGLGLCGEGSASGLKELMMGSHSMFGPKQTTLDFLGLGMVAGGSPNGGLSALIASIGGGLDVATAAASFGGGEFSGKDMGRTS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12459846 12462388 - Conep06aG0167300.1 Cone6ag1610 440494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1610 516 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Cone6ag1610 516 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Cone6ag1610 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 473 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone6ag1610 516 FunFam protein indeterminate-domain 12-like 42 110 - -
Cone6ag1610 516 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cone6ag1610 516 Gene3D Classic Zinc Finger 43 109 - -
Cone6ag1610 516 Gene3D Classic Zinc Finger 117 198 - -
Cone6ag1610 516 MobiDBLite consensus disorder prediction 1 19 - -
Cone6ag1610 516 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Cone6ag1610 516 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Cone6ag1610 516 MobiDBLite consensus disorder prediction 1 47 - -
Cone6ag1610 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cone6ag1610 516 MobiDBLite consensus disorder prediction 348 372 - -
Cone6ag1610 516 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 203 - -
Cone6ag1610 516 MobiDBLite consensus disorder prediction 197 239 - -
Cone6ag1610 516 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cone6ag1610 516 SMART c2h2final6 104 134 IPR013087 -
Cone6ag1610 516 SMART c2h2final6 139 159 IPR013087 -
Cone6ag1610 516 SMART c2h2final6 63 85 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0268 Cone-Chr16:2992420 Cone6ag1610 Cone-Chr6:12459846 1.78E-72 dispersed
Cone2ag0699 Cone-Chr2:32559838 Cone6ag1610 Cone-Chr6:12459846 3.23E-70 dispersed
Cone3ag1314 Cone-Chr3:32052872 Cone6ag1610 Cone-Chr6:12459846 1.47E-104 dispersed
Cone6ag1610 Cone-Chr6:12459846 Cone7ag1220 Cone-Chr7:9051517 3.50E-100 dispersed
Cone4ag1898 Cone-Chr4:13515979 Cone6ag1610 Cone-Chr6:12459846 3.10E-123 wgd
Cone6ag1610 Cone-Chr6:12459846 Cone7ag1811 Cone-Chr7:11826012 5.11E-119 wgd
Cone6ag1610 Cone-Chr6:12459846 Cone9ag1538 Cone-Chr9:11184713 1.69E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46416 PF00107 ADH_zinc_N 7.30E-33 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1610 K25869 - vvi:100263342 634.024