Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag1610 | ATGCCGAAAGAGTTGGATAACTCCTCCACCGCTTCAGGGGAAGCTAGTCTGTCTCCCTCCGGCTATCAAGCACCGCCACTGCCACCGAAATCTTCCGGCAAGAAAAAGCGGAACCTCCCCGGAATGCCAGATCCGGATGCAGAGGTGATAGCTCTGTCGCCAAAAACTCTATTAGCGACGAACCGATTCGTTTGCGAAATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTCCAGCTTCATCGAAGAGGTCATAACCTGCCATGGAAACTTAGGCAGAGAACGAGCAAGGAGGTGAAGAAGAGGGTCTACGTCTGCCCTGAACCATCCTGTGTTCACCATGATCCGTCTCGAGCTTTAGGTGATCTAACGGGGATTAAAAAGCACTTTTGCAGAAAGCACAGCGAGAAGAAGTGGAAATGCGATAAGTGCTCTAAGAAATACGCCGTTCAGTCCGACTGGAAAGCCCATTCTAAGATTTGCGGCACTAGAGAGTATAAATGCGATTGCGGAACGCTATTTTCCAGGAGGGATAGTTTTATAACGCATAGGGCGTTCTGTGACGCGTTAGCGGAGGAGAGTGCAAAGGCTCAAACGCAACCGGAAACAATGGAGGCGGTGGATCCGAATGCAGAGTTCGACCCGAATGTTATGCCCGTTAGCTCTTCTTCTTCGCCTCCTCCAGCTCAGCAACCGCCAGCTGCTACTACTTCGAAGTCGACTGCTCTTATCGCTTCGGTTTTGCCCATTAGCAGCCAAGAAACCCAACAACTTATTGAAGAAGGACCATCAGCTACTACAGCAACAGGCGTGAATGGGACCTCTAGTAGTAGCCCGAGTTGCAATAGCAGCCCGAGTAGTAGTGTATTTGCAAGCTTATTTGCATCCTCAACTGTCTCACTATCCTTACAACCATCTCGACCCCCTGCATTTACAGACCTAATACAAGCCGTGTCCCATTCAGATCGCCCAACTGACCTCACCCCTCCATCTTCAACCACTGAAGCCATCTCTCTCTGCCTCTCAACCAATCACCACTCATCCATATTCGGGCCTGCCAGCCCAGAAAGGAGGCAATACGCCCCGCCGCCACCACCACCAACTCAACAACAGGCAGCCATTTCCGCCACAGCATTGCTCCAGAAAGCTGCCCAGATGGGAGCTGTGGCAACTAATGCAACATTGCTTCGAGGGTTGGGGGTAGTATCTTCATCTTCTCCATCAGGGCAACAACAAGAGAATACTTTGCAATGGAATCAACGACCGGTGGAACAGGATAATACTTTGGTTCCACCTGGCCTTGGACTTGGGCTTTGTGGTGAAGGGTCTGCTTCTGGGTTGAAAGAATTGATGATGGGAAGTCATTCAATGTTTGGTCCGAAGCAAACCACTCTTGATTTTCTTGGATTGGGAATGGTGGCAGGGGGTAGCCCTAATGGCGGTTTGTCCGCTTTAATTGCATCTATTGGTGGTGGTTTGGATGTTGCTACGGCGGCTGCATCATTCGGAGGGGGTGAATTCTCGGGCAAAGATATGGGTAGGACCTCTTGA | 1551 | 50.48 | MPKELDNSSTASGEASLSPSGYQAPPLPPKSSGKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHSEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQTQPETMEAVDPNAEFDPNVMPVSSSSSPPPAQQPPAATTSKSTALIASVLPISSQETQQLIEEGPSATTATGVNGTSSSSPSCNSSPSSSVFASLFASSTVSLSLQPSRPPAFTDLIQAVSHSDRPTDLTPPSSTTEAISLCLSTNHHSSIFGPASPERRQYAPPPPPPTQQQAAISATALLQKAAQMGAVATNATLLRGLGVVSSSSPSGQQQENTLQWNQRPVEQDNTLVPPGLGLGLCGEGSASGLKELMMGSHSMFGPKQTTLDFLGLGMVAGGSPNGGLSALIASIGGGLDVATAAASFGGGEFSGKDMGRTS | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12459846 | 12462388 | - | Conep06aG0167300.1 | Cone6ag1610 | 440494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag1610 | 516 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 138 | 162 | - | - | |
Cone6ag1610 | 516 | Pfam | Zinc finger, C2H2 type | 63 | 85 | IPR013087 | - | |
Cone6ag1610 | 516 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 473 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone6ag1610 | 516 | FunFam | protein indeterminate-domain 12-like | 42 | 110 | - | - | |
Cone6ag1610 | 516 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Cone6ag1610 | 516 | Gene3D | Classic Zinc Finger | 43 | 109 | - | - | |
Cone6ag1610 | 516 | Gene3D | Classic Zinc Finger | 117 | 198 | - | - | |
Cone6ag1610 | 516 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cone6ag1610 | 516 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 100 | 134 | - | - | |
Cone6ag1610 | 516 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 117 | 196 | - | - | |
Cone6ag1610 | 516 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cone6ag1610 | 516 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Cone6ag1610 | 516 | MobiDBLite | consensus disorder prediction | 348 | 372 | - | - | |
Cone6ag1610 | 516 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 203 | - | - | |
Cone6ag1610 | 516 | MobiDBLite | consensus disorder prediction | 197 | 239 | - | - | |
Cone6ag1610 | 516 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 159 | IPR036236 | - | |
Cone6ag1610 | 516 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Cone6ag1610 | 516 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Cone6ag1610 | 516 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0268 | Cone-Chr16:2992420 | Cone6ag1610 | Cone-Chr6:12459846 | 1.78E-72 | dispersed | |
Cone2ag0699 | Cone-Chr2:32559838 | Cone6ag1610 | Cone-Chr6:12459846 | 3.23E-70 | dispersed | |
Cone3ag1314 | Cone-Chr3:32052872 | Cone6ag1610 | Cone-Chr6:12459846 | 1.47E-104 | dispersed | |
Cone6ag1610 | Cone-Chr6:12459846 | Cone7ag1220 | Cone-Chr7:9051517 | 3.50E-100 | dispersed | |
Cone4ag1898 | Cone-Chr4:13515979 | Cone6ag1610 | Cone-Chr6:12459846 | 3.10E-123 | wgd | |
Cone6ag1610 | Cone-Chr6:12459846 | Cone7ag1811 | Cone-Chr7:11826012 | 5.11E-119 | wgd | |
Cone6ag1610 | Cone-Chr6:12459846 | Cone9ag1538 | Cone-Chr9:11184713 | 1.69E-272 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46416 | PF00107 | ADH_zinc_N | 7.30E-33 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag1610 | K25869 | - | vvi:100263342 | 634.024 |