Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1617 ATGGCAAACATGATCGCCGATAGTGGTAATCTAATGGCTATAGCTCAACAAGTGATGAAGCAGAAACAGCAGCAAGATCAACAGCAAAAACAGAATCAGAATCACCCGCTTAATGGGCTCACTACTACTTTTTCTCTTACTACTCCTTGGGCTAATAATTCTCACCACGCTCCCAGTTTGGGGTTTGTTGGGCTTCCGGGCTCTTCGGGATTTACCGACCCGTTTCAGGTGGTTTCTGCTTCCGCCGGAGGAGGAGCTGAACCGAGTTTTCCGTTTGCCAACTTGGAGCATCACCACCACCACTCAGGGTTTAGGTTTGCCGAATTTGGCGGCGGTGGCGGCGGAGCTGGGGGTACTGAGTTTGAGTCGGACGATTGGATGGATAGCCTAATGGCTGGTGGAGATTCAACGGATAGTTCCAACCTTCCGTCTGGATGTGACACGTGGCATACTAATGCCGAGTTTAATCTTTACGCCTCTGATCCGTTCGCACCCCCCTGCAACCCAAGTCGACTCAGTATAGCTTGCTCTCCACCGTCGGATCTCAACCGAGTTATCATCAACTCGTCTCCACTTGATCAAACTCAAGTCCCCGCATGGGCCCCGCCGCCTCAACTTCCATCTCCACCACCATCATCTCTCCTCCATGACGCGAAGCAACAGCAGCAGCAACTTCCCAAAACCGACATCGTTTACGTCGGCTCATCGAGCTCACCAGAAATCGAATCAACACCGCCTCTTCTGAAAACTCTACTCGATTGTGCTCGACTCACTGAGTCTGAACCAGATCGAGCTGTGAAAATACTGATACGACTCAGAGAATCGTTATCGGAGCACGGAGATCCGACGGAGAGAGTTGCCTTCTACTTCTCTGAAGCTCTTTACAGCAGATTATCTCCTCAATCGGATCAAATCTCATCGCCAGCATCATCTTCGCTCTGCGAAACAACTTCTGAAGAGTTCACTCTCTCTTACAAAGCTCTAAACGATGCTTGTCCTTACTCAAAATTCGCCCATCTCACGGCAAATCAAGCGATTCTCGAAGTTACAGGACGAGCTAGTAAGATTCACATAGTTGATTTCGGCATCGTTCAAGGAGTTCAGTGGGCCGCTCTTCTACAAGCATTAGCGACAAGGTCCACCGGACGGCCAAGTAAGATACGGATCTCAGGCATACCAGCTCCGGTCCTCGGTGAATCTCCAGCGGCATCGCTTTTAGCTACTGGAAATCGTCTCTGCGAGTTCGCGAAGCTTCTGGAGCTTAACTTCGAGTTCGAACCGATTCTCACACCGATCGAGGAACTGACCGAGTCAAGCTTCCGAGTAGACTCGGATGAGGTACTCGGCGTGAATTTCATGCTCCAACTGTATAATCTGCTGGAGGAAACTCCAGTTGCGGTTCAAAACGCTCTCCGGTTAGCAAAATCGTTGAATCCTAACATAGTGACCCTAGGAGAACACGAAGCTAAACTGAACCGGGTTGGCTTTGTGAACCGGTTCCAGAACGCATTGAAGTACTACACGGCCATTTTCGAATCGCTTGAACCGAGTTTGAACCGTGAATCGCCAGAGAGGCTCGAGCTAGAGAAAACCCTGCTCGGCCGGCGGATTTCCGGTGTGATCGGAACAGATGATCAACTGGGAAGGCGGAGGGAAAGGATGGAAGATAAGGAGCAGTGGAAATTTCTAATGGAGAGCTCAGGGTTTGAACCGGTTTCGATGAGTCATTACTCTGTGAGTCAAGCTAAGATTCTGCTTTGGAACTATAACTATAGCTCTCTGTATTCAGTGATCGAATCTCCGCCAGGGTTTCTCTCTTTGGCATGGAACGACGTTCCTTTGCTCACAGTTTCTTCATGGCGTTGA 1866 49.79 MANMIADSGNLMAIAQQVMKQKQQQDQQQKQNQNHPLNGLTTTFSLTTPWANNSHHAPSLGFVGLPGSSGFTDPFQVVSASAGGGAEPSFPFANLEHHHHHSGFRFAEFGGGGGGAGGTEFESDDWMDSLMAGGDSTDSSNLPSGCDTWHTNAEFNLYASDPFAPPCNPSRLSIACSPPSDLNRVIINSSPLDQTQVPAWAPPPQLPSPPPSSLLHDAKQQQQQLPKTDIVYVGSSSSPEIESTPPLLKTLLDCARLTESEPDRAVKILIRLRESLSEHGDPTERVAFYFSEALYSRLSPQSDQISSPASSSLCETTSEEFTLSYKALNDACPYSKFAHLTANQAILEVTGRASKIHIVDFGIVQGVQWAALLQALATRSTGRPSKIRISGIPAPVLGESPAASLLATGNRLCEFAKLLELNFEFEPILTPIEELTESSFRVDSDEVLGVNFMLQLYNLLEETPVAVQNALRLAKSLNPNIVTLGEHEAKLNRVGFVNRFQNALKYYTAIFESLEPSLNRESPERLELEKTLLGRRISGVIGTDDQLGRRRERMEDKEQWKFLMESSGFEPVSMSHYSVSQAKILLWNYNYSSLYSVIESPPGFLSLAWNDVPLLTVSSWR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12490663 12493007 + Conep06aG0168000.1 Cone6ag1617 440501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1617 621 MobiDBLite consensus disorder prediction 17 43 - -
Cone6ag1617 621 Pfam GRAS domain family 248 621 IPR005202 -
Cone6ag1617 621 MobiDBLite consensus disorder prediction 194 221 - -
Cone6ag1617 621 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 229 620 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone6ag1617 621 MobiDBLite consensus disorder prediction 197 211 - -
Cone6ag1617 621 ProSiteProfiles GRAS family profile. 238 621 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1617 Cone-Chr6:12490663 Cone7ag0660 Cone-Chr7:3486769 4.06E-44 dispersed
Cone12ag0754 Cone-Chr12:6965512 Cone6ag1617 Cone-Chr6:12490663 6.08E-19 wgd
Cone4ag1387 Cone-Chr4:11215157 Cone6ag1617 Cone-Chr6:12490663 7.10E-42 wgd
Cone6ag1617 Cone-Chr6:12490663 Cone8ag0799 Cone-Chr8:8031598 2.79E-19 wgd
Cone6ag1617 Cone-Chr6:12490663 Cone9ag1542 Cone-Chr9:11208012 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46417 PF10155 CNOT11 8.30E-53 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1617 - - - 0.0