Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1625 ATGGAGCTGAGGAGCGGCCAAGATCACAAGCAACTGAAATCATCACCTTCAAGTGTGATTTACAATTCTCCGGCCAGAATTCCTGATCAAAGAAGATCAAATCAACATCAGACTGCTGCTCATCATGGCAGCACAGATATTACCTTCAACAACACAACTCATGAAAGCCTAGATCATCATGATCATCAACTCCCACACGGTCATCACAATTATGATCAAAACAGTACTACCCTCCTACTAAATCCACATGAACAACACAATTCAAACAGACCGGCCAGAACCGATCCGATTTTCAACACAAACCCCGATCTGACCGCAGCTCAAACAAGGACAACTACTGGTGTTCATGATCCAACTATCATTAATGCAGTCCAATACCGAGAATGTCTAAAGAATCATGCGGCAAACATGGGCGGTTATGCCCTAGACGGATGCCGTGAATTCATGCCAAGCGGATCGGACATGAATTCGCCCGAGTCCTTCAAATGTGCTGCTTGTGAATGTCACCGCAATTTTCACCGCAAAGAGGTTGAAGGCTCGAACGAACCCCCATCCCCACAATTCAGACCTAATTCCTTGCATTATCATCATCAATTATCACGGAGCAATATTATTCCGACGGGTCCGGTGGGGAACATCATGATGACTTTTGGAGGTAGAAGCAATGGGGCTGGGGTGACAATGGGAGATCAGTCTTCAAGTGAAGATCTTCATGATTATCATCGTGATGACATGATGTATGATCAGAAGCCATCATCTTCTTCCGGGAAGAAGAGGTTTAGGACAAAGTTTAGTGAGGAGCAGAAGAACAAGATGATGGAGTTTGCTGAGAAGTTGGGATGGAGGATTCAGAAACAGGATGAGCGGGAAGTACAGCAGTTTTGTACCGAGGTTGGCGTAAAGAGGCAAGTTTTTAAGGTTTGGATGCATAATAAGCAAGCTATGAAGAAGAAACTATTTAAAGATATCGATGATCACGATCAATAA 987 44.07 MELRSGQDHKQLKSSPSSVIYNSPARIPDQRRSNQHQTAAHHGSTDITFNNTTHESLDHHDHQLPHGHHNYDQNSTTLLLNPHEQHNSNRPARTDPIFNTNPDLTAAQTRTTTGVHDPTIINAVQYRECLKNHAANMGGYALDGCREFMPSGSDMNSPESFKCAACECHRNFHRKEVEGSNEPPSPQFRPNSLHYHHQLSRSNIIPTGPVGNIMMTFGGRSNGAGVTMGDQSSSEDLHDYHRDDMMYDQKPSSSSGKKRFRTKFSEEQKNKMMEFAEKLGWRIQKQDEREVQQFCTEVGVKRQVFKVWMHNKQAMKKKLFKDIDDHDQ 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12526272 12528232 + Conep06aG0168900.1 Cone6ag1625 440509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1625 328 MobiDBLite consensus disorder prediction 53 68 - -
Cone6ag1625 328 FunFam Zinc-finger homeodomain protein 2 244 318 - -
Cone6ag1625 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 177 IPR006456 -
Cone6ag1625 328 Gene3D - 244 318 - -
Cone6ag1625 328 Pfam ZF-HD protein dimerisation region 124 177 IPR006456 -
Cone6ag1625 328 NCBIfam homeobox domain, ZF-HD class 257 312 IPR006455 -
Cone6ag1625 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 176 IPR006456 -
Cone6ag1625 328 MobiDBLite consensus disorder prediction 10 52 - -
Cone6ag1625 328 MobiDBLite consensus disorder prediction 1 103 - -
Cone6ag1625 328 MobiDBLite consensus disorder prediction 69 103 - -
Cone6ag1625 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 86 313 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone6ag1625 328 SUPERFAMILY Homeodomain-like 247 318 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1625 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0192 Cone-Chr2:1012302 Cone6ag1625 Cone-Chr6:12526272 3.96E-17 dispersed
Cone6ag0586 Cone-Chr6:2878195 Cone6ag1625 Cone-Chr6:12526272 8.56E-32 dispersed
Cone6ag1541 Cone-Chr6:12098444 Cone6ag1625 Cone-Chr6:12526272 2.52E-39 dispersed
Cone6ag1625 Cone-Chr6:12526272 Cone9ag1456 Cone-Chr9:10797334 2.60E-38 dispersed
Cone2ag0736 Cone-Chr2:33106686 Cone6ag1625 Cone-Chr6:12526272 1.04E-39 transposed
Cone17ag1347 Cone-Chr17:9437164 Cone6ag1625 Cone-Chr6:12526272 1.73E-51 wgd
Cone20ag0136 Cone-Chr20:611376 Cone6ag1625 Cone-Chr6:12526272 9.54E-53 wgd
Cone4ag1915 Cone-Chr4:13600964 Cone6ag1625 Cone-Chr6:12526272 7.77E-45 wgd
Cone6ag1625 Cone-Chr6:12526272 Cone7ag1827 Cone-Chr7:11904214 5.34E-44 wgd
Cone6ag1625 Cone-Chr6:12526272 Cone9ag1550 Cone-Chr9:11257951 2.16E-185 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46419 PF00069 Pkinase 5.80E-45 CL0016 Cone TF