Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1627 ATGGCGTCGAATTCTATGAGCGCATCATGGACGTCTAAGCAAAACAAGCAATTTGAGAAGGCGTTGGCTCTGTACGACAAGGACACTCCGGATCGTTGGCAGAATATAGCAAAGTCCGTACCCGGAAAATCGGCCGACGAGGTGAAGCAGCACTATGACATCCTTATCGAAGATGTCAAGCACATCGAGACTGGCAAAGTCCCTCTCCCATCTTACAGATCATCGAATAAGAAGACTACTAGTACTACTACTTCTGCTTATTAG 264 46.59 MASNSMSASWTSKQNKQFEKALALYDKDTPDRWQNIAKSVPGKSADEVKQHYDILIEDVKHIETGKVPLPSYRSSNKKTTSTTTSAY 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12534155 12534784 - Conep06aG0169100.1 Cone6ag1627 440511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1627 87 ProSiteProfiles Myb-like domain profile. 2 56 IPR001005 -
Cone6ag1627 87 Gene3D - 2 69 - -
Cone6ag1627 87 FunFam Transcription factor SRM1 2 69 - -
Cone6ag1627 87 Pfam Myb-like DNA-binding domain 9 52 IPR001005 -
Cone6ag1627 87 CDD SANT 9 52 IPR001005 -
Cone6ag1627 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 82 IPR044636 GO:0003700(InterPro)
Cone6ag1627 87 MobiDBLite consensus disorder prediction 66 87 - -
Cone6ag1627 87 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Cone6ag1627 87 MobiDBLite consensus disorder prediction 69 87 - -
Cone6ag1627 87 ProSiteProfiles SANT domain profile. 5 60 IPR017884 -
Cone6ag1627 87 SMART sant 6 58 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1627 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0959 Cone-Chr10:6429348 Cone6ag1627 Cone-Chr6:12534155 2.21E-32 dispersed
Cone13ag0408 Cone-Chr13:3719724 Cone6ag1627 Cone-Chr6:12534155 1.83E-10 dispersed
Cone3ag1164 Cone-Chr3:30301211 Cone6ag1627 Cone-Chr6:12534155 1.81E-34 dispersed
Cone4ag1912 Cone-Chr4:13590212 Cone6ag1627 Cone-Chr6:12534155 2.59E-29 dispersed
Cone4ag1916 Cone-Chr4:13610924 Cone6ag1627 Cone-Chr6:12534155 4.52E-26 dispersed
Cone6ag1627 Cone-Chr6:12534155 Cone8ag1000 Cone-Chr8:9364410 4.55E-24 dispersed
Cone20ag0135 Cone-Chr20:606876 Cone6ag1627 Cone-Chr6:12534155 2.14E-23 wgd
Cone6ag1627 Cone-Chr6:12534155 Cone9ag1552 Cone-Chr9:11264527 9.55E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g983 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1627 Cone9ag1552 . . . . . . . . . . . . . . . . Cma20g00850 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46420 PF02519 Auxin_inducible 1.20E-18 No_clan Cone TF