Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1628 ATGGGGACTGATGTTACTGAAATCCAAGAGACCGTGCCAAAACCTCAATCTTTTAAGGTTCATAGTCTAATGTGCACAGAACTAATGGAATTAGTCGAGCGAATCTCGAAAATACTCCCCCGAATAGAAGCAGCCAGACCTGGCTGCTCAACTGGATTACAGGCCCTTTGCTCCTTAAGCCATGCCATCGACAAAGCAAACCTTCTTCTTCAATATTGCAGCGAGTCCAGTAAACTTTACCTGGCATTAACGGGAGATGCTATACTGTTAAGATGTCAAAGATCACGGAATATATTGGAGCAGAATTTATGCCAATTTCAGGACAAGGTTCCTGTAATGTTAGCTGTGGAAGTTTCTAGAATATCTGATGATCTTAGAGGTGCAAAGTTTATCCTCGATTCATCCGAAGAAGAAGCAGGGAAGGCCTTGAAGCAATTGCTAATGCAAAGCACTTCCATGTCAGATTCTATAGAAGATTCTGAAATGCGAACTTTTAGAATTGCTGCATCAAAGCTTCATCTAACATCAGCCAAAGCAATCTTGATAGAGAGGAGATCGATTAGGATTTTTCTGAAAACCGTCGATGAAAATGATTTGAGAAAAAAAAAGATCTTGGCTTACCTTTTGAATCTTTTGAAAAAGTTAGAAAACTCAAATGATTTGGAAAAAGGAAATTCATTTGGAATTGAGAAGAATGATTATTCTGTTCAAAGCTCGGTACAAAATGGATCAGGTGATATTGAACTTCTTGATAGTTCTGTTCCTCCCTTGGAATTCAAGTGCCCGATTTCTTGTAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGGCAGACATATGAACGTTTTTGGATACAAAAATGGTTTGATGAGGGAAATGATACCTGCCCGGAAACGAAAACGAAACTGACCCATCTTTCAATGATTCCAAATACTACCTTGAAGGATTTAATGTCAAGATGGTGTAAAATGCTTGGTGTTACAATTCTTGACCCAAGCAGGCAAATACGCGAGCTTAACTCATGGGAGAATTCTTCGAATTCTATTGCTAGTTTAGGAAGTTCTATGAATGATTTACGTTTCCAGATGGATTTGAGCAATGTCTCACTTGGATCTCTTGATACTAGTTACGGCTCTGATTCTTTATCTCGAACGAAGAATGTAAAAAATGAGGTAAGTCTGAGTTCGAAACGGGAAAAAGATTTTAACTTTCCGGGAAATCTTAGTGAGCTTCCATGGGAATCTCAATGTAAAGCCATTGAAGATATGGAGATTTACTCGAAAGACAATTCTCGAGTTTTTCCGAATTTAATGAAGACAAATGTCATTGACCAACTTATGATATTTTTGAAGGATGCAGTTGACCGTAACGATCCAAAAGCTCAGAGAGAAGGATCTGCACTATTACTTGCATTAGTTAGTAAAAACAGATGTGGATTGCCAAACATTGTAGAAGACACATTCCGGATTTTCCCGGATTTGCTTGGTTCCGAAATAACAAAAGAAGTTCTTTCAACTCTTGAAGTGTTATCTGGCCATAAGAGTTATAGACATAAGTTCATAGCAGGTGGTGTTCTTGGTCCCATTCTAGACTTCCTTAACTCTGATATTAGAGATTACCAAGAAATAGCCATTAGAATACTCCGCAAGTTGTCCTCAAACAGTGATATTCATTCCCACTTTGTCTCTTCCCAATGTGTTCCGAAATTGGTTCCATTTTTGAAAGACATTGATCTTGCGGGAAACTGTATTTTCATTCTGAGAAATTTGTCAGAAACAGAGGAGGCTCGGGTTTCTATAGCTGAAACTAAAGGGTGCTTTGCTTCAATTGCTCAAATTCTAGAAACGGATGATGTGGAAGACCAAGAGAGTGCGGTTTTTGTTCTGCTCTCTTTATGTTCTCAGAAAGTTCAATATTGTCAGTTGGTTATGGATGAAGGTGTGATTCCTTCTCTTGTTAATATTTCTGTTAATGGAAGTGAAAAAGGGAGGGTGGGTGCACTTGAAATGCTCCGGCAGTTGAAAGATATCGACTTCTGCCCCGAGAAAGAATTATATGAGATTCAACTCGGTGAAAATCGAGACATGAAGAGTGATTTTGATGAGAAGAAACCTGCGTCCAAGGGATCTGGTTTTTTGGGTAGGAAATTTTCAATCTTTTCCTCTCAAAGGAAGAAGAAATGA 2184 38.55 MGTDVTEIQETVPKPQSFKVHSLMCTELMELVERISKILPRIEAARPGCSTGLQALCSLSHAIDKANLLLQYCSESSKLYLALTGDAILLRCQRSRNILEQNLCQFQDKVPVMLAVEVSRISDDLRGAKFILDSSEEEAGKALKQLLMQSTSMSDSIEDSEMRTFRIAASKLHLTSAKAILIERRSIRIFLKTVDENDLRKKKILAYLLNLLKKLENSNDLEKGNSFGIEKNDYSVQSSVQNGSGDIELLDSSVPPLEFKCPISCRLMYDPVVIASGQTYERFWIQKWFDEGNDTCPETKTKLTHLSMIPNTTLKDLMSRWCKMLGVTILDPSRQIRELNSWENSSNSIASLGSSMNDLRFQMDLSNVSLGSLDTSYGSDSLSRTKNVKNEVSLSSKREKDFNFPGNLSELPWESQCKAIEDMEIYSKDNSRVFPNLMKTNVIDQLMIFLKDAVDRNDPKAQREGSALLLALVSKNRCGLPNIVEDTFRIFPDLLGSEITKEVLSTLEVLSGHKSYRHKFIAGGVLGPILDFLNSDIRDYQEIAIRILRKLSSNSDIHSHFVSSQCVPKLVPFLKDIDLAGNCIFILRNLSETEEARVSIAETKGCFASIAQILETDDVEDQESAVFVLLSLCSQKVQYCQLVMDEGVIPSLVNISVNGSEKGRVGALEMLRQLKDIDFCPEKELYEIQLGENRDMKSDFDEKKPASKGSGFLGRKFSIFSSQRKKK 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12536070 12539532 + Conep06aG0169200.1 Cone6ag1628 440512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1628 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 326 IPR013083 -
Cone6ag1628 727 SUPERFAMILY RING/U-box 255 329 - -
Cone6ag1628 727 CDD RING-Ubox_PUB 256 308 IPR045210 -
Cone6ag1628 727 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1628 727 SMART Ubox_2 258 321 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1628 727 SMART arm_5 636 676 IPR000225 GO:0005515(InterPro)
Cone6ag1628 727 SMART arm_5 554 592 IPR000225 GO:0005515(InterPro)
Cone6ag1628 727 SUPERFAMILY ARM repeat 413 675 IPR016024 -
Cone6ag1628 727 PANTHER U BOX DOMAIN-CONTAINING 24 676 - -
Cone6ag1628 727 Gene3D - 414 681 IPR011989 -
Cone6ag1628 727 Pfam U-box domain 256 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0712 Cone-Chr12:6553517 Cone6ag1628 Cone-Chr6:12536070 6.07E-91 dispersed
Cone6ag1628 Cone-Chr6:12536070 Cone8ag0740 Cone-Chr8:7457912 4.41E-82 dispersed
Cone12ag0765 Cone-Chr12:7041172 Cone6ag1628 Cone-Chr6:12536070 2.60E-174 wgd
Cone17ag1349 Cone-Chr17:9445026 Cone6ag1628 Cone-Chr6:12536070 3.07E-151 wgd
Cone6ag1628 Cone-Chr6:12536070 Cone8ag0814 Cone-Chr8:8171749 6.96E-186 wgd
Cone6ag1628 Cone-Chr6:12536070 Cone9ag1553 Cone-Chr9:11266669 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50