Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1629 ATGTCCTTGAAAAGCATAGTGAGAGAGTTAAAGGAAATGAAAGATGGGATTGGAAGTATATCAAGGCGAGGAGGAGAAAGGAAGCATTGGCGTAACAGAACAAGGTCTTATATAGCACCGGATCAAGCCCCTGCCCCGCCTGAGTTTATCGAACAAAGCCGTTGGGCTGCTCTACCTTCCGAATTGCTTTTGGACATTATCCGGAGGGTGGAAGAGAGTGAAACATCCTGGCCCGCTAGGGCAGCTGTGCTTTTCTGTGCTTCAGTTTGTAAGTCATGGAGAGATGTTACTAAGGAGATTGTTAAAACGCCTGAGCAATGTGGGAGACTCACTTTTCCCATCTCTTTGAAGCAGCCGGGGCCCCGTGAATCTCCTATACAATGCTATATTAGAAGGGACAGAGTCAATTCAACCTATCTCCTCTATTTTGGTTTGGTTCCTTCGGAGAATGAGAATGATAAGTTACTGCTAGCAGCCAAGAGAATCAGAAGGGCAACAGGCACAGACTTTGCTATATCCTTAGTAACTGATGATTTCTCTTGGTCCAGCAATACTTATGTTGGTAAATTAAGGTCAAATTTTTTGGGTACAAAGTTTGTTATATATGACAGCCTACCCCCAAGCAACTCAATATCCAAACAAAACACTCGATCTAGCCGTAGATTCCGGTCCAAACAAGTCTCTCCAAAAGTACCAGCTTGTAATTACAATGTAGGTACAATTTCTTATGAGCTTAATGTTCTCAGAACAAGAGGGCCAAGGAGAATGCATTGTGTTATGGACTCAATTCCAGTCTCTTCTTTACAAGATGGAGGAACCGCACCTACTCCCACGTCATTTTCATATTCTGTAAATGAACAAATTTGTCATGATCCCTTACCTTGTTCTAAGGGAAAAGAGCCAATCATAGATTTTAGTTCCACAAGCCTCTCCTCGGATCCACCACCACCACTACCACCACCACCAAACCCGAGATCAGAGGATTCATTGGTTCTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGTTTGAACTTCAGAGGGAGAGTTACAGTGGCTTCTGTTAAGAATTTCCAGCTTGTAGCAGCAACTGACCCAGCACATAATGTTTCAGCAGAAGAGCAGGACAAAGTGATTTTGCAGTTTGGGAAAATTGGAAGAGATATTTTTACCATGGATTATCGTTACCCGCTCTCTGCCTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGATACTAAACCAGCTTGTGAATGA 1269 43.26 MSLKSIVRELKEMKDGIGSISRRGGERKHWRNRTRSYIAPDQAPAPPEFIEQSRWAALPSELLLDIIRRVEESETSWPARAAVLFCASVCKSWRDVTKEIVKTPEQCGRLTFPISLKQPGPRESPIQCYIRRDRVNSTYLLYFGLVPSENENDKLLLAAKRIRRATGTDFAISLVTDDFSWSSNTYVGKLRSNFLGTKFVIYDSLPPSNSISKQNTRSSRRFRSKQVSPKVPACNYNVGTISYELNVLRTRGPRRMHCVMDSIPVSSLQDGGTAPTPTSFSYSVNEQICHDPLPCSKGKEPIIDFSSTSLSSDPPPPLPPPPNPRSEDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAATDPAHNVSAEEQDKVILQFGKIGRDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12539797 12541830 - Conep06aG0169300.1 Cone6ag1629 440513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1629 422 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515(InterPro)
Cone6ag1629 422 Gene3D - 49 102 - -
Cone6ag1629 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cone6ag1629 422 Pfam Tub family 116 417 IPR000007 -
Cone6ag1629 422 MobiDBLite consensus disorder prediction 312 326 - -
Cone6ag1629 422 PANTHER TUBBY-RELATED 39 421 - -
Cone6ag1629 422 MobiDBLite consensus disorder prediction 304 329 - -
Cone6ag1629 422 SUPERFAMILY Tubby C-terminal domain-like 104 422 IPR025659 -
Cone6ag1629 422 Gene3D Tubby Protein; Chain A 114 422 IPR025659 -
Cone6ag1629 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cone6ag1629 422 PRINTS Tubby superfamily signature 170 186 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1629 Cone-Chr6:12539797 Cone8ag0970 Cone-Chr8:9140265 5.79E-149 dispersed
Cone4ag1918 Cone-Chr4:13616392 Cone6ag1629 Cone-Chr6:12539797 1.60E-170 wgd
Cone6ag1629 Cone-Chr6:12539797 Cone7ag1830 Cone-Chr7:11921540 2.33E-172 wgd
Cone6ag1629 Cone-Chr6:12539797 Cone9ag1554 Cone-Chr9:11270251 2.20E-286 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46421 PF00415 RCC1 1.90E-09 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1629 K19600 - csv:101205595 634.409