Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag1629 | ATGTCCTTGAAAAGCATAGTGAGAGAGTTAAAGGAAATGAAAGATGGGATTGGAAGTATATCAAGGCGAGGAGGAGAAAGGAAGCATTGGCGTAACAGAACAAGGTCTTATATAGCACCGGATCAAGCCCCTGCCCCGCCTGAGTTTATCGAACAAAGCCGTTGGGCTGCTCTACCTTCCGAATTGCTTTTGGACATTATCCGGAGGGTGGAAGAGAGTGAAACATCCTGGCCCGCTAGGGCAGCTGTGCTTTTCTGTGCTTCAGTTTGTAAGTCATGGAGAGATGTTACTAAGGAGATTGTTAAAACGCCTGAGCAATGTGGGAGACTCACTTTTCCCATCTCTTTGAAGCAGCCGGGGCCCCGTGAATCTCCTATACAATGCTATATTAGAAGGGACAGAGTCAATTCAACCTATCTCCTCTATTTTGGTTTGGTTCCTTCGGAGAATGAGAATGATAAGTTACTGCTAGCAGCCAAGAGAATCAGAAGGGCAACAGGCACAGACTTTGCTATATCCTTAGTAACTGATGATTTCTCTTGGTCCAGCAATACTTATGTTGGTAAATTAAGGTCAAATTTTTTGGGTACAAAGTTTGTTATATATGACAGCCTACCCCCAAGCAACTCAATATCCAAACAAAACACTCGATCTAGCCGTAGATTCCGGTCCAAACAAGTCTCTCCAAAAGTACCAGCTTGTAATTACAATGTAGGTACAATTTCTTATGAGCTTAATGTTCTCAGAACAAGAGGGCCAAGGAGAATGCATTGTGTTATGGACTCAATTCCAGTCTCTTCTTTACAAGATGGAGGAACCGCACCTACTCCCACGTCATTTTCATATTCTGTAAATGAACAAATTTGTCATGATCCCTTACCTTGTTCTAAGGGAAAAGAGCCAATCATAGATTTTAGTTCCACAAGCCTCTCCTCGGATCCACCACCACCACTACCACCACCACCAAACCCGAGATCAGAGGATTCATTGGTTCTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGTTTGAACTTCAGAGGGAGAGTTACAGTGGCTTCTGTTAAGAATTTCCAGCTTGTAGCAGCAACTGACCCAGCACATAATGTTTCAGCAGAAGAGCAGGACAAAGTGATTTTGCAGTTTGGGAAAATTGGAAGAGATATTTTTACCATGGATTATCGTTACCCGCTCTCTGCCTTCCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGATACTAAACCAGCTTGTGAATGA | 1269 | 43.26 | MSLKSIVRELKEMKDGIGSISRRGGERKHWRNRTRSYIAPDQAPAPPEFIEQSRWAALPSELLLDIIRRVEESETSWPARAAVLFCASVCKSWRDVTKEIVKTPEQCGRLTFPISLKQPGPRESPIQCYIRRDRVNSTYLLYFGLVPSENENDKLLLAAKRIRRATGTDFAISLVTDDFSWSSNTYVGKLRSNFLGTKFVIYDSLPPSNSISKQNTRSSRRFRSKQVSPKVPACNYNVGTISYELNVLRTRGPRRMHCVMDSIPVSSLQDGGTAPTPTSFSYSVNEQICHDPLPCSKGKEPIIDFSSTSLSSDPPPPLPPPPNPRSEDSLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAATDPAHNVSAEEQDKVILQFGKIGRDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12539797 | 12541830 | - | Conep06aG0169300.1 | Cone6ag1629 | 440513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag1629 | 422 | SUPERFAMILY | F-box domain | 51 | 99 | IPR036047 | GO:0005515(InterPro) | |
Cone6ag1629 | 422 | Gene3D | - | 49 | 102 | - | - | |
Cone6ag1629 | 422 | ProSitePatterns | Tub family signature 1. | 350 | 363 | IPR018066 | - | |
Cone6ag1629 | 422 | Pfam | Tub family | 116 | 417 | IPR000007 | - | |
Cone6ag1629 | 422 | MobiDBLite | consensus disorder prediction | 312 | 326 | - | - | |
Cone6ag1629 | 422 | PANTHER | TUBBY-RELATED | 39 | 421 | - | - | |
Cone6ag1629 | 422 | MobiDBLite | consensus disorder prediction | 304 | 329 | - | - | |
Cone6ag1629 | 422 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 422 | IPR025659 | - | |
Cone6ag1629 | 422 | Gene3D | Tubby Protein; Chain A | 114 | 422 | IPR025659 | - | |
Cone6ag1629 | 422 | ProSitePatterns | Tub family signature 2. | 407 | 422 | IPR018066 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 379 | 398 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 332 | 349 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 400 | 422 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 350 | 366 | IPR000007 | - | |
Cone6ag1629 | 422 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone6ag1629 | Cone-Chr6:12539797 | Cone8ag0970 | Cone-Chr8:9140265 | 5.79E-149 | dispersed | |
Cone4ag1918 | Cone-Chr4:13616392 | Cone6ag1629 | Cone-Chr6:12539797 | 1.60E-170 | wgd | |
Cone6ag1629 | Cone-Chr6:12539797 | Cone7ag1830 | Cone-Chr7:11921540 | 2.33E-172 | wgd | |
Cone6ag1629 | Cone-Chr6:12539797 | Cone9ag1554 | Cone-Chr9:11270251 | 2.20E-286 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46421 | PF00415 | RCC1 | 1.90E-09 | CL0186 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag1629 | K19600 | - | csv:101205595 | 634.409 |