Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1630 ATGGCTAGCCGGTTCGGGCTAGTTTCTTGTATATACCCGCTCCTCTTTGTGCTAATTTCCCTTGTTTCTCATCCTGTAGAAGCTGCTATTAAAAGATACCAGTTTGATGTGCAAGTGAAGAATGTGAGTAGATTGTGTCATGCAAAACCGATTGTGACGGTAAATGGGAGGTTTCCAGGGCCAACAATATATGTAAGAGAAGGAGACAGAGTTCTTGTTAATGTTACAAACCATGCACAATATAACCTGTCTATTCACTGGCACGGTCTGAAGCAATATAGGAATGGTTGGGCGGACGGGCCGGCCTACATCACACAATGTCCGATCCAGACAGGAAGAAGCTACACATACGACTTCAATGTAACAGGACAAAGAGGAACATTGTGGTGGCATGCACATATCCTTTGGCTAAGGGCTACTGTCTATGGTGCTATTGTTATTATGCCTAAACCTGGAACCCCTTTCCCCTTCCCTCAGCCCAATAGAGAATTTGAAATTGTACTAGGAGAATGGTGGAACAATGATGTTGAAGAGGTAGTGAAGCAAGGGAACCAAATGGGTTTACCTCCAAACATGTCGGACGCTCACACCATTAATGGCAAGCCAGGTCCCTTGTTCCCATGTTCCGAAAAACATACATACGTAATGGAGGTTGAATCCGGTAAGACATATCTACTAAGAATCGTCAACGCTGCTCTAAACGACGAGCTGTTCTTCGCCATAGCCAATCACAGCATGACAGTTGTAGAAGTTGATGCAGTTTACACTAAGCCCTTCACAACTCAAGCCATCTTAATTGCTCCTGGACAGACAACAAATGTTCTTATCCAAGCTAACCAGGTCCCAAATAGATATTTCGTGGCTATTAAACCTTTCATGGATGCCCCTATTCCGGTTGATAACAAAACCGCAACTGCAATCTTCCAATACAAGAACATCCCAAACACAGTTCTTCCAATCCTTCCTCAACTCCCTTCCTCAAATGACTCATCTTTTACTTTAAACTATGCCAAAAAACTTAAGAGCTTAAACTCACCTAAATTTCCGGCTAATGTACCACTTAATGTGGACCGGAAATTGTTCTACACAGTCGGTTTGGGGAAGAGTTCTTGCCCGACATGTCTAAATGGGACAAGGCTTCTAGCTTCTTTGAACAATATCTCTTTTGTGATGCCTCACGTTGGGCTTCTTCAAGCTCATTACTTTGACATCAAAGGGGTTTTTCGGGCTGATTTTCCCGATAGACCTCCGGTTCCGTTTAACTACACGGGTGCACCCTTAACGGCTAATCTCAGAACTTTAACGGGTACAAGGGTGAGCAAGATTGCCTTTAATTCTACCGTGGAGTTAGTTTTACAAGATACAAATCTTTTAACGGTCGAATCACATCCATTTCATCTCCATGGATATAACTTTTTCGTGGTGGGAACTGGTATTGGAAATTTTGATCAAGCTAAAGATCCAGCGAAGTATAATTTGGTTGATCCGGTTGAAAGAAACACAGTTGGAGTTCCAACTGGGGGTTGGACTGCTATTCGGTTTAGAGCCGATAATCCGGGTGTTTGGTTTATGCATTGTCATTTGGAACTTCATACGGGTTGGGGTTTGAAGACGGCATTCGTTGTTGAAGATGGGCCCGGAAAAGACCAAAACATCCTTCCCCCACCTAAGGACCTTCCATCATGTTAA 1689 43.4 MASRFGLVSCIYPLLFVLISLVSHPVEAAIKRYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNLSIHWHGLKQYRNGWADGPAYITQCPIQTGRSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKPGTPFPFPQPNREFEIVLGEWWNNDVEEVVKQGNQMGLPPNMSDAHTINGKPGPLFPCSEKHTYVMEVESGKTYLLRIVNAALNDELFFAIANHSMTVVEVDAVYTKPFTTQAILIAPGQTTNVLIQANQVPNRYFVAIKPFMDAPIPVDNKTATAIFQYKNIPNTVLPILPQLPSSNDSSFTLNYAKKLKSLNSPKFPANVPLNVDRKLFYTVGLGKSSCPTCLNGTRLLASLNNISFVMPHVGLLQAHYFDIKGVFRADFPDRPPVPFNYTGAPLTANLRTLTGTRVSKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDQAKDPAKYNLVDPVERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFVVEDGPGKDQNILPPPKDLPSC 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12545457 12549747 + Conep06aG0169400.1 Cone6ag1630 440514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1630 562 NCBIfam laccase 28 562 IPR017761 GO:0046274(InterPro)|GO:0048046(InterPro)|GO:0052716(InterPro)
Cone6ag1630 562 FunFam Laccase 161 346 - -
Cone6ag1630 562 Gene3D - 21 149 IPR008972 -
Cone6ag1630 562 ProSitePatterns Multicopper oxidases signature 2. 525 536 IPR002355 GO:0005507(InterPro)
Cone6ag1630 562 PANTHER MULTI-COPPER OXIDASE 30 555 IPR045087 GO:0016491(PANTHER)
Cone6ag1630 562 FunFam Laccase 19 149 - -
Cone6ag1630 562 Pfam Multicopper oxidase 411 544 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Cone6ag1630 562 CDD CuRO_2_LCC_plant 166 310 IPR034285 -
Cone6ag1630 562 ProSitePatterns Multicopper oxidases signature 1. 520 540 IPR033138 -
Cone6ag1630 562 Pfam Multicopper oxidase 37 150 IPR011707 GO:0005507(InterPro)
Cone6ag1630 562 Pfam Multicopper oxidase 166 312 IPR001117 -
Cone6ag1630 562 CDD CuRO_1_LCC_plant 33 149 IPR034288 GO:0005507(InterPro)
Cone6ag1630 562 Gene3D - 161 345 IPR008972 -
Cone6ag1630 562 SUPERFAMILY Cupredoxins 353 562 IPR008972 -
Cone6ag1630 562 Gene3D - 372 562 IPR008972 -
Cone6ag1630 562 SUPERFAMILY Cupredoxins 26 174 IPR008972 -
Cone6ag1630 562 SUPERFAMILY Cupredoxins 157 324 IPR008972 -
Cone6ag1630 562 CDD CuRO_3_LCC_plant 407 545 IPR034289 GO:0005507(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1630 K05909 - - csv:101218482 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0743 Cone-Chr12:6817345 Cone6ag1630 Cone-Chr6:12545457 2.78E-87 dispersed
Cone5ag0168 Cone-Chr5:701706 Cone6ag1630 Cone-Chr6:12545457 1.85E-207 dispersed
Cone6ag1630 Cone-Chr6:12545457 Cone7ag1105 Cone-Chr7:8338127 8.91E-257 dispersed
Cone11ag1554 Cone-Chr11:10837511 Cone6ag1630 Cone-Chr6:12545457 2.08E-71 transposed
Cone6ag1630 Cone-Chr6:12545457 Cone9ag1555 Cone-Chr9:11275737 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g988 Blo04g00914 Blo16g00049 . . Bpe15g00426 Bpe13g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1630 Cone9ag1555 . . . . . . Bda11g01862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484