Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1632 ATGAATGATCTGATGACAAAATCGTTTTTAAGTTATGTGGAGTTAAAGAAACAAGCCCGGAAGGACGAACAAGATGGCAATGATTTCGACTTAGAAACAGTGTCCACCAACAAAGAAGAAGAACAAGAAGACCCCAAACTCTCCCAATTCTTCCAAGATGTTTCTTCACTCAAATCTGAAATGGAAGAGATTTCCAATCTCTTGATCGATCTTCAGGCTCTAAACTTAGAATCCAAATCAACCCACAGCGCTAAACTCCTACGCGGAATCCGAGACCGAATGGAATCCAACATGGCCTCAATCCTCCGGAAGGCCAAGACTGTCCGTTCAACCCTGGAATCGCTCGATCGAACGGCCCACAAAACCCGAAAAACCCACGTGGATAGAACAAAGATATCTGTTACTAATGGGCTTAGAGTCAAACTAAGGGAAATGATGAATGATTTTCAGGCCTTAAGGGACAAAATAGTATCAGACCACAAGGAGGATTTGAAAAGGAGATATTTTGTCAAAACAGGAGAGCAAGCAAGCGAGGAAGTGATAGAAAAGATGATGTTAGGAGGAGGGGGAGATAAAGTGGCAGTGTTTATTGAAGAAGAAGGGAAAACAGAAGATGTGGAAATGGGGAACAGAGTAAGGCATGAGGCAGTGATTGATATACAGAGGAGTTTGAACAAGCTTCATCAAGTGTTTATAGACATGGCGGTCTTGGTCGAGACTCAAGGAGAGAAGATGGACGATATAGAAGAGAATGTGGTGAATGCTGCTAGTTATGTGAGTGGTGGGACTACTAGTCTTTTTTATGCTAATCAGATGAAGAAGAAGAGTAGGAAGTGGGTTTGTTGGGTGTTGGGTGTGCTTTTCATTATATTTGTCGTTTGCCTCATTGCTATGTTGTCTTCTTGA 906 42.16 MNDLMTKSFLSYVELKKQARKDEQDGNDFDLETVSTNKEEEQEDPKLSQFFQDVSSLKSEMEEISNLLIDLQALNLESKSTHSAKLLRGIRDRMESNMASILRKAKTVRSTLESLDRTAHKTRKTHVDRTKISVTNGLRVKLREMMNDFQALRDKIVSDHKEDLKRRYFVKTGEQASEEVIEKMMLGGGGDKVAVFIEEEGKTEDVEMGNRVRHEAVIDIQRSLNKLHQVFIDMAVLVETQGEKMDDIEENVVNAASYVSGGTTSLFYANQMKKKSRKWVCWVLGVLFIIFVVCLIAMLSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12550084 12550989 - Conep06aG0169600.1 Cone6ag1632 440516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1632 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 269 IPR000727 -
Cone6ag1632 301 FunFam Syntaxin 132 200 300 - -
Cone6ag1632 301 SUPERFAMILY t-snare proteins 45 262 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone6ag1632 301 Pfam Syntaxin 49 242 IPR006011 GO:0016020(InterPro)
Cone6ag1632 301 CDD SynN 47 184 IPR006011 GO:0016020(InterPro)
Cone6ag1632 301 CDD SNARE_syntaxin1-like 213 266 - -
Cone6ag1632 301 SMART tSNARE_6 200 269 IPR000727 -
Cone6ag1632 301 SMART SynN_4 42 161 IPR006011 GO:0016020(InterPro)
Cone6ag1632 301 Gene3D - 42 165 - -
Cone6ag1632 301 MobiDBLite consensus disorder prediction 18 45 - -
Cone6ag1632 301 Gene3D - 198 300 - -
Cone6ag1632 301 Coils Coil 54 77 - -
Cone6ag1632 301 Pfam SNARE domain 244 293 IPR000727 -
Cone6ag1632 301 PANTHER SYNTAXIN 49 289 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1346 Cone-Chr3:32432230 Cone6ag1632 Cone-Chr6:12550084 1.08E-32 dispersed
Cone6ag1632 Cone-Chr6:12550084 Cone9ag1556 Cone-Chr9:11278763 1.94E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1632 K08486 - gmx:112997615 369.007