Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1636 ATGAAGCAACGGCGGAGTGGTTACGAGCCGTCGGATACGGAGACTGAGTGGAACGATGACGAGAGCCTCTGGAATAGTAAGAGTATTAATCACAATCGAAACGACAGAGTGGTAGGCATTTCGGATTTACGGCGACATAACAATATCAGTCCGATTCGACTCAGCCGGAGAGCGAATTCATCCAGGTTTGAATTTGATCAAATATCTACCACTACTTCTGGAAAAGATCCGATTCGTAGAAGAACTAGTAGCAAATCGCCGTACAGGCCGGAAAGAGAAGAAGTAGAAGAAGATGAAAACAATGATTTCATCTTTCATCGGAAAACTCTCGGTCCGGTTCGAAGATTTGAGCGGAAGAGACAAACCTCGCCATACAAATCTGCAACCGGAGATCAATATCCGGAGAATAGAATGATTCCGAAACCACCCGGATACCATAGAAGGGCGGTCACCACTCCGCGAATGAGACCACCTTCAGTCGGCGAAATCAACGAAATGATCGCAAACGCAAAGATCTCAAAAAATCCAAAATCACATAACGATCCGGTAATAACTCAAAGCTCCGATTCAATTTCTCAAGGTGATATATTCTTTTCCCGCGATCACACTCAAAACACTGTTTTCCGAAGCTATCTTAGCCCGAAACCAAAACTGATCTCTCAATCGCAAAGAGACCATTCATATTCTGCTTCTTATCAACAAGTTAGACGATCTTCTTCTACGATGACGTTTTCGAGTTCGGTTGTAAGCGGGCAGAGTAGTAAAATGAGTGATTCGACTGGGGGAACTACCACAAGTATGAGAAATTTTGTATCAAATAGGAAGAAGAGTCAAAGTAGTAAGGAGTTGTGGTTTGCTTGTGTAAGAAAAGGATCTTGTAGCACAAGAAAATCGCCTGAGAAACGAGCGTTTGATGAAGCATCGTTCATCGGAAAAGCATCGGTGGTTGAAGATTTGAGACAGTTCTGGGCGGATAAGTATCAGCCTAGTTCTTTAGACGGGTTCATCTGTCACAAACAGGCTTCTCACCTTCTCAAGCAATTGGCAAGCGTATCTAATGAAAAAAACTGTCCCTATATGTTGTTGAAGGGCCCGCCTGGGGCCGGGAAAAGAGCTCTAACTATGGCTTTTTTACATGAACTATATGGCAGTTCATGTTGGAATGTTTCTCATGATTTAAGACACTTCCAGATTCCGGATAATAGACAGTCCGGAAGAGTGGCCGTTCCGTTAGCGTCGAGTCCTCACCATGTGGAGTTGAATGTAAGCTCGGAAGCTAATTCCAAATATGCTCTAATGGGATTAGTCAAAGAAATCAGCAATGAATATGCTCTCACCATTCCAGACCGCAGCACCGTTAGTATCAAACCACATTACAAAGTTGTAGTTCTTTATGGCGTGGACGAGTCGACCGAGGACATTCAGCACCTGATAAAATGGATCATGGACTGTTACATAGATGTTTGCAGACTAATACTCTGCTGTGAAGACGATTCAAATATACTCGAACCCATTAAAACCCGATGTAAACTTATCGAAGTTAATGCTCCATCGAATCATGAAATTATGGAGGTGCTTATGCAAATAGCAGGAAATGAGGGATTTGATTTATCAATGAGCTTTGCATTGAAAATCGCTACGAAATCGAACCAGAACATGAGAAGTGCTATAATGGGACTTGAAGCATGTAAAGCACATGAATACCCTTTCGTGGAGGAGCAACCGGTTCCGATCGGATGGGACGAGGCGGTTATGGAGCTTGCTTTCGAGATTCTAGCTAATCCGTCACCTACTAGATTGTATATCATAAAGGAAAAGATTCAGAAGCTTCTAGTAGATTCTGTTCACCCAAAACTGATTCTCCAGAGGCTAGCGGAACAATTTCTAAAGAGAGCTGAAGGGAGTTTGAAAAGGGAGCTTCATTACTGGCATGCTTATTATAACAAGAGACTTCCGACAGGAACAAGTGCTTCACTGAAACTGCAAGAGTTTGTGGCGAAGTTCATGAGCATATACAGGAAGAGCTCAAGCAATTTCCGTTATCCGGATAATTGA 2055 42.92 MKQRRSGYEPSDTETEWNDDESLWNSKSINHNRNDRVVGISDLRRHNNISPIRLSRRANSSRFEFDQISTTTSGKDPIRRRTSSKSPYRPEREEVEEDENNDFIFHRKTLGPVRRFERKRQTSPYKSATGDQYPENRMIPKPPGYHRRAVTTPRMRPPSVGEINEMIANAKISKNPKSHNDPVITQSSDSISQGDIFFSRDHTQNTVFRSYLSPKPKLISQSQRDHSYSASYQQVRRSSSTMTFSSSVVSGQSSKMSDSTGGTTTSMRNFVSNRKKSQSSKELWFACVRKGSCSTRKSPEKRAFDEASFIGKASVVEDLRQFWADKYQPSSLDGFICHKQASHLLKQLASVSNEKNCPYMLLKGPPGAGKRALTMAFLHELYGSSCWNVSHDLRHFQIPDNRQSGRVAVPLASSPHHVELNVSSEANSKYALMGLVKEISNEYALTIPDRSTVSIKPHYKVVVLYGVDESTEDIQHLIKWIMDCYIDVCRLILCCEDDSNILEPIKTRCKLIEVNAPSNHEIMEVLMQIAGNEGFDLSMSFALKIATKSNQNMRSAIMGLEACKAHEYPFVEEQPVPIGWDEAVMELAFEILANPSPTRLYIIKEKIQKLLVDSVHPKLILQRLAEQFLKRAEGSLKRELHYWHAYYNKRLPTGTSASLKLQEFVAKFMSIYRKSSSNFRYPDN 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12558775 12561497 + Conep06aG0170000.1 Cone6ag1636 440520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1636 684 Pfam Replication factor C subunit 3, C-terminal domain 580 669 - -
Cone6ag1636 684 Gene3D - 518 575 - -
Cone6ag1636 684 MobiDBLite consensus disorder prediction 1 33 - -
Cone6ag1636 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 565 IPR027417 -
Cone6ag1636 684 MobiDBLite consensus disorder prediction 63 77 - -
Cone6ag1636 684 MobiDBLite consensus disorder prediction 116 159 - -
Cone6ag1636 684 Pfam RCF1/5-like, AAA+ ATPase lid domain 524 564 - -
Cone6ag1636 684 MobiDBLite consensus disorder prediction 243 268 - -
Cone6ag1636 684 Gene3D - 320 517 IPR027417 -
Cone6ag1636 684 FunFam replication factor C subunit 3 518 576 - -
Cone6ag1636 684 MobiDBLite consensus disorder prediction 63 100 - -
Cone6ag1636 684 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 323 674 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone6ag1636 684 MobiDBLite consensus disorder prediction 78 100 - -
Cone6ag1636 684 Gene3D - 579 672 - -
Cone6ag1636 684 SUPERFAMILY post-AAA+ oligomerization domain-like 579 672 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1636 K10756 - - cit:102609520 608.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1636 Cone-Chr6:12558775 Cone9ag1557 Cone-Chr9:11281576 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38