Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1638 ATGGAGAGCCTCGCGCATTCTAGACAGCACTCGAGCAGGGGCTCTTCCGCCAAGCTTGCTTCTAAGAAAACCTTCAACAACAGCAACAGCAGCAACAATGGCGCTTCATTTTCATCTAAGACCATCTACGACGACGTTTACGGAGGTCCACCTAAGTACGCCGCCTCCTCCGCCGCTCTCTCTCCCCGCTTCGAAGACTACAGTGAGATTTTCGGCAGCTTTCACGTTTCGCGCGCTTCTTCCATTCCTTACCTCGATCTTCCTCCCGTCGATGAAACGGAGATCTTTTTCGACGTTCGGAGCTCCGGCTTTGACTACTCTGAAGTTTTCGGAGCTTCCGACGGTCTCGATTTCGCCGTTTCCTATGACGAATTGGTCGATCAATCCAGGCCAAGAGAACAAGAAGAAGATGATTCCTCCCAAGAAGCTTGGACTCCAGCAAGAACCGAATCTTTGTCTGGAGACTCGGATCATTCCGGAAAGAATCTTCGTTTCTCAAACGGAGATTCCGACCCCCCCTTTGATGCAAGTCCAGAGTTTAACATATCCTACAATGCGGCTAATATTCGAGGAATCAATGGAGATTTGACCAATGGGATGACGGCACATGCCAGCGGAATCACCTGCCTAGGCCATGAATTATCTCCGGATGAGAATCCTTCCTCCTTTCAGGTTTGTGATGATAGCTATCTCAGTATGGATTTCAGTATGAAAAAAGAGATTAAGGGCAAGCATTTCAATAATGGTGATGGACCGGCATTTAGAAATGCTCCGAATGAGATGTTTGTAACTATATCAGAAATCAATCTTAGAACTGAGCCTTGTCATGTTCCACCGCCATCTCGTCCACCTCCCAGAAAGGATGTGGGTACCTCTGGATTGAGTTCAAACATTGAAGTCAGTTCAGGTGATAGTTCTCCTACTTTCTTTGATGTGGAGGTGGATTCCAGTTCTTCAGCTGCTGCCTCGGCTGCAGCCATTAAAGAAGCGATGGAGAAAGCTAAAGCAAAAATGCAAAGTGCTAGAGAGAGAATGGAGAAGAAGAAGGAGGGTGGGGTCCATAACCGTGTTAAGCCAGTTCCGAAAATTGATGCTACAGAAGATGGAAAAGTTGAGGTTATAAAGACAACTGATAATAAGCCTAGTGCTTTTGAGAAAGTTGATTGTGCTAATGAATGGAAAGAAGAAATGGGTTTTTTCGAATTGGTGAGAACGGATAAACCTAGAAAGGTTGCTTCTGGGCAGGCGAATGAGGAGAGGGTATTGGTTAGTAATGATCGTGGGGAGAGGGAAAGGGAGAAGACTGTCATGGAAGCATTTATGGAGCAGATAGAAGAAAATGACAAGAAAGTGAAAGCAAATCGAAAAGCTCATGGACGGAAGGAAAAAGACACTTTGAAGTCGAAAAAACCAGCTGAAGAAGATAAAAAGAAAACCGGGCTGGCCCAACCCTTTTCAGAGAGTAAGACGGAAATAAACGGAGCTACTAAAGTTGGGAAAGATGAAAATTTGGTGGGGTTTAAACAGAGGGAAAATATTTGTGAATCTGACCAGGCAATGCCTCGGAGAGAAAACGAGGGAAAAAAGAAAGAGGCTGGTAAGAGAAATGAGAGTTATAGTATAATCGAGGAGTCTCGAAGAAGAGAAGACAATGCTAAGGAACAGAAGGATGCTGCTCAGCATGAAGAAAATAAGAAAGTTGTTGAAGAGGAAGAAAATGAGAAGAGGCTAACAGAGGCTGCTCTTAATGAACAGGCAGAAGAGAATAAGAAAAGAGTTGAAGAGGAGGTCATAAGACTGAAGAAGGAGGTTCTTGATCAGGAAGAAAATGAGAGGAGGATTAAAGTGGCTCTTGAGAAGGAAGAGAACTTGAAGAGACAAGAAGAAGAAGAAGAAAGCGATGGAGAATATGAGAGGGAATTGGAAGAAGCTCTTGCCCGGGAAATTTTCAAGCAAAGAGAAAGGGAGGCACGTAAACTACTTTGCGTGCAGGACGGGTACAGAAAAAGGTCAAGATTTCAACACGTGGATGCATGTGAGACAATATTCGAGGAATCATTTGAACTTGGTGACATTGACAACAATATATCGAAAGATAATAGTGAGTGTGAAGAAGAGGAGACAGAGAAGATGCTTAGAGATGAATTTGATGAGAGAGAAGCTTTCAAGGGAGCAAGTCATCAAGTTAATGATGAAAACATGATAACAATGGAAGTAAATACTCAAGATGGCCTTACTAAAGAAAACGGACTGATGGTAAAACCTGAATCCCCTTTTAGTGAAAGTCAACCGGAAAACCCCAAAGTTGACGAAAAACCTGAAGATGCTAAGAGAGTTGAAATGGAAGAAATAAAACATGATCATAATAAAGAGATGAAATTTACTCGAGAGAGGCCGGTAAATCAAGGGGGGAACGAGAGGGCTGAAAAGGAAAAGAATCTAAATGAGATACTTGAATCCAGAAGGAAAGAGAATGAGAGGTTGAAGAATGAGGAGAAAGAACTCGAGAATGAACAGCTCCGAAAGTTGGAAGAAGAGAGAGAGAGAGAGAGGGAAAGGGAGAAGGATAGGATGGTTGCTAATGAAGCTCAACAAAGAGCAATGAATGAGGCTCGTGAAAGGTTAGAGAGAGCCTGTGTTGAGGCTAGAGAGAAGTCACTAGCAGGTAGGGCAGCTATGGAGGCAAAGATTCGAGCAGATCGGGCAGCAGTCGAGCGAGCTAATGCAGAGGCCAGAGAACGGATGGAAAGATCTATTTCTGACAAATTCTCTGCTTCCTCTTCTTCCAGAAATAATGGAATGAGACAGTCCTCCTCCTCCTCTGATCTTTCTAATCTAAAATCTCAAAGTTTGGGTCCTACATCCGTTGGTTTTAGATACACCTATTCATCGTCATTTTCTGAGAGAACTGAGGGGGTTGAAGGTGAGACGGCTCAAAGGTGTAAAGCCAGATTGGAAAGGTACCAGAGAACAGCGGAACGAGCGGCTAAAGCTCTTGCTGAAAAGAATATGCGTGATCTTCTTGCTCAGAGAGAGCAAGCAGAGAGACATAGATTAGCTGAAACTCTAGATGCCGATGTCAGAAGGTGGTCAAGTGGGAAAGAAGGGAACTTGCGAGCCTTACTATCAACATTGCAATATATTCTTGGACCTGATGTTGGATGGCAGCCCATCCCCCTGACCGAAGTGATAACCTCGGCTGCTGTAAAGAAAGCTTACCGAAAAGCAACTCTTTGCGTTCATCCTGATAAGTTGCAGCAAAGAGGTGCAAATATTCAACAGAAGTATGTTTGTGAAAAGGTCTTCGATCTCCTCAAGGAAGCTTGGAACAGATTCAATTCAGAAGAGAGGTAG 3354 43.95 MESLAHSRQHSSRGSSAKLASKKTFNNSNSSNNGASFSSKTIYDDVYGGPPKYAASSAALSPRFEDYSEIFGSFHVSRASSIPYLDLPPVDETEIFFDVRSSGFDYSEVFGASDGLDFAVSYDELVDQSRPREQEEDDSSQEAWTPARTESLSGDSDHSGKNLRFSNGDSDPPFDASPEFNISYNAANIRGINGDLTNGMTAHASGITCLGHELSPDENPSSFQVCDDSYLSMDFSMKKEIKGKHFNNGDGPAFRNAPNEMFVTISEINLRTEPCHVPPPSRPPPRKDVGTSGLSSNIEVSSGDSSPTFFDVEVDSSSSAAASAAAIKEAMEKAKAKMQSARERMEKKKEGGVHNRVKPVPKIDATEDGKVEVIKTTDNKPSAFEKVDCANEWKEEMGFFELVRTDKPRKVASGQANEERVLVSNDRGEREREKTVMEAFMEQIEENDKKVKANRKAHGRKEKDTLKSKKPAEEDKKKTGLAQPFSESKTEINGATKVGKDENLVGFKQRENICESDQAMPRRENEGKKKEAGKRNESYSIIEESRRREDNAKEQKDAAQHEENKKVVEEEENEKRLTEAALNEQAEENKKRVEEEVIRLKKEVLDQEENERRIKVALEKEENLKRQEEEEESDGEYERELEEALAREIFKQREREARKLLCVQDGYRKRSRFQHVDACETIFEESFELGDIDNNISKDNSECEEEETEKMLRDEFDEREAFKGASHQVNDENMITMEVNTQDGLTKENGLMVKPESPFSESQPENPKVDEKPEDAKRVEMEEIKHDHNKEMKFTRERPVNQGGNERAEKEKNLNEILESRRKENERLKNEEKELENEQLRKLEEEREREREREKDRMVANEAQQRAMNEARERLERACVEAREKSLAGRAAMEAKIRADRAAVERANAEARERMERSISDKFSASSSSRNNGMRQSSSSSDLSNLKSQSLGPTSVGFRYTYSSSFSERTEGVEGETAQRCKARLERYQRTAERAAKALAEKNMRDLLAQREQAERHRLAETLDADVRRWSSGKEGNLRALLSTLQYILGPDVGWQPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGANIQQKYVCEKVFDLLKEAWNRFNSEER 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12565717 12570492 + Conep06aG0170200.1 Cone6ag1638 440522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 127 177 - -
Cone6ag1638 1117 Coils Coil 890 912 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 921 950 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 1 38 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 618 632 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 8 38 - -
Cone6ag1638 1117 Coils Coil 542 647 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 422 482 - -
Cone6ag1638 1117 Gene3D DnaJ domain 990 1117 IPR036869 -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 908 950 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 765 868 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 144 166 - -
Cone6ag1638 1117 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 698 1117 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 335 364 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 618 639 - -
Cone6ag1638 1117 Coils Coil 978 1017 - -
Cone6ag1638 1117 Coils Coil 861 885 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 410 594 - -
Cone6ag1638 1117 FunFam Auxilin-related protein 1 988 1117 - -
Cone6ag1638 1117 Coils Coil 324 351 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 743 868 - -
Cone6ag1638 1117 Coils Coil 807 857 - -
Cone6ag1638 1117 SUPERFAMILY Chaperone J-domain 977 1116 IPR036869 -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 272 306 - -
Cone6ag1638 1117 ProSiteProfiles dnaJ domain profile. 1053 1117 IPR001623 -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 515 594 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 127 143 - -
Cone6ag1638 1117 MobiDBLite consensus disorder prediction 290 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1638 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0010 Cone-Chr12:113385 Cone6ag1638 Cone-Chr6:12565717 1.28E-57 dispersed
Cone6ag1245 Cone-Chr6:9917875 Cone6ag1638 Cone-Chr6:12565717 7.52E-60 dispersed
Cone6ag1638 Cone-Chr6:12565717 Cone9ag1217 Cone-Chr9:8858598 3.66E-61 dispersed
Cone4ag1922 Cone-Chr4:13635799 Cone6ag1638 Cone-Chr6:12565717 5.99E-61 wgd
Cone6ag1638 Cone-Chr6:12565717 Cone7ag1834 Cone-Chr7:11939248 4.86E-63 wgd
Cone6ag1638 Cone-Chr6:12565717 Cone9ag1558 Cone-Chr9:11288162 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41