Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1649 ATGGATTCGTCTAGTGGGGTTTCATCAGGGTCAACCGGTTTTCGGAACTCGGGTTCTGAAGAAGATCACTTGAAACATGTTACGGATCAAAGGAAGAGGAAAAGAATGTTGTCGAATCGAGAATCGGCACGTCGATCCCGTATGAGAAAACAGAAGCACTTGGATGATTTGAGCTCCAAGGTGGATCAGATCAGAAAGGAGAATAGCTATACCATCACTAACGCAAATATCACTACTCAATTATACAGGCAACTCGAGGTGGAGAACTCGATTCTTCGGGCTCAGATGGCAGAGCTCAGCCATCGATTGCGGTCGCTGAACGATATCATAAGTTGTTTGAATTCAGGCATGAGTAGTACTACTACTGGAATTGGTTTTGAATCTGATCATCACGGTCATCATGATGAGGTTGAAGGGTTTGTGAATTCTTGGAGTCCAAGATTTGTGAATCAACCAATTATGGTGGATAGTCATGATCATCATGACATGTTTATGTGCTAA 501 42.91 MDSSSGVSSGSTGFRNSGSEEDHLKHVTDQRKRKRMLSNRESARRSRMRKQKHLDDLSSKVDQIRKENSYTITNANITTQLYRQLEVENSILRAQMAELSHRLRSLNDIISCLNSGMSSTTTGIGFESDHHGHHDEVEGFVNSWSPRFVNQPIMVDSHDHHDMFMC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12603613 12604113 + Conep06aG0171400.1 Cone6ag1649 440533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1649 166 Coils Coil 82 102 - -
Cone6ag1649 166 Pfam bZIP transcription factor 31 85 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 FunFam BZIP transcription factor 29 80 - -
Cone6ag1649 166 SUPERFAMILY Leucine zipper domain 31 85 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 Coils Coil 47 67 - -
Cone6ag1649 166 CDD bZIP_plant_GBF1 32 83 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 SMART brlzneu 27 91 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 MobiDBLite consensus disorder prediction 1 17 - -
Cone6ag1649 166 MobiDBLite consensus disorder prediction 41 60 - -
Cone6ag1649 166 PANTHER BZIP TRANSCRIPTION FACTOR 44 11 117 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cone6ag1649 166 MobiDBLite consensus disorder prediction 1 60 - -
Cone6ag1649 166 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 69 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1649 166 Gene3D - 29 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1649 K25786 - - mdm:114820331 162.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1164 Cone-Chr12:9263441 Cone6ag1649 Cone-Chr6:12603613 8.09E-32 dispersed
Cone3ag1176 Cone-Chr3:30427842 Cone6ag1649 Cone-Chr6:12603613 2.46E-30 dispersed
Cone6ag1649 Cone-Chr6:12603613 Cone9ag1397 Cone-Chr9:10398304 1.00E-09 dispersed
Cone12ag0777 Cone-Chr12:7122943 Cone6ag1649 Cone-Chr6:12603613 8.77E-32 wgd
Cone17ag1360 Cone-Chr17:9512218 Cone6ag1649 Cone-Chr6:12603613 3.01E-24 wgd
Cone20ag0121 Cone-Chr20:532466 Cone6ag1649 Cone-Chr6:12603613 4.75E-30 wgd
Cone4ag1931 Cone-Chr4:13666929 Cone6ag1649 Cone-Chr6:12603613 1.01E-24 wgd
Cone6ag1649 Cone-Chr6:12603613 Cone7ag1844 Cone-Chr7:11970248 1.50E-24 wgd
Cone6ag1649 Cone-Chr6:12603613 Cone8ag0826 Cone-Chr8:8246249 1.58E-28 wgd
Cone6ag1649 Cone-Chr6:12603613 Cone8ag1213 Cone-Chr8:10291970 6.66E-26 wgd
Cone6ag1649 Cone-Chr6:12603613 Cone9ag1573 Cone-Chr9:11329068 3.20E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g348 . Blo15g00708 . . Bpe07g00418 . . Bma12g00501 . . Cma02g00382 Cma20g00832 Car02g00247 Car20g00717 . . . . . . . . . . . . . . . . . . Cone12ag0777 Cone6ag1649 Cone9ag1573 Lsi10g00392 . Chy11g00361 . . . . . . . . . Sed05g3527 Cmo02g00388 Cmo20g00841 . . . . Cpe16g00257 Cpe05g01275 Bhi10g01980 Tan05g1278 Cmetu11g2335 . Hepe08g0998 . . . . . . . . . . Csa02g01282 . Cme11g00136
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008232 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46422 None None None None Cone TF