Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1659 ATGGCTGGGTTTTTCTCGTTAGGCGGCCGTGGAGGAAGATTACGAAGGTCAAGACAAAACCAAAACCAAGAACAAGATCACCCCGAAATTCATCCAGACGCGGCCTTCTACTGGTGCAGAAATAATAACCCTCACCACCCTCATCATCATCCTCAATGGCTGCAAGATCATCCTTACTCCTACGCGGTGGGACACAATATAGATGAATCTCCGCCGTCCACGTCAGCAGGACCGGCGTTTATGATGATGAGTGGTAGTACAAGCAGCAGCAGTAGTATAAGCTGCCAAGATTGCGGGAATCAAGCGAAGAAGGATTGTATTCACATGCGCTGTAGAACTTGCTGCAAGAGCCGAGGCTTCGATTGTCCAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCTAGACGGCGAGAACGCCAACAGCAACACCAACCACAGCAAGCTCATCTCTCTTCCCAACAACAACAACAACAACGTCAAATTCAACAGTCAAAGAGACAAAGGGATCATCAGATCATTGATCCTAGCACAACTGGTGCTCATGCTTACTCGTCAGGTAATACGGAGTTGGCGAAGTTTCCGGCCGAAGTGAGTAGTACCGCTGTGTTCCGGTGTGTTAAGGTGAGCTCAATCGACGATGGTGAGGATCAATTCGCTTATCAGACGGCTGTGAATATAGGAGGGCATTTGTTCAAGGGAATTCTCTACGACCAAGGCCCTGATCATCACAATAACTACAATATACCACTCGGCGAGACGTCGTCGGGTACAGGTGGCAGTACAGCTGGTGGCAGCGGCCGTGCGACTCAGCAACTTAATTTCATGGATGCTGCCAGAACCACCGCTTCCGGAGCAACGCCAAGCAGTAGTGCTCAGCATCATCATCGTCATGCGGTTGGTGGTGGTTTGTATGATCCTAATTCTTTATACTCAACTACGCAGACGAATAGTTTCAATATGGCTGGTACGCAATTCTTCCTTCCGCCTAGATCTTAG 996 49.2 MAGFFSLGGRGGRLRRSRQNQNQEQDHPEIHPDAAFYWCRNNNPHHPHHHPQWLQDHPYSYAVGHNIDESPPSTSAGPAFMMMSGSTSSSSSISCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVKSTWVPASRRRERQQQHQPQQAHLSSQQQQQQRQIQQSKRQRDHQIIDPSTTGAHAYSSGNTELAKFPAEVSSTAVFRCVKVSSIDDGEDQFAYQTAVNIGGHLFKGILYDQGPDHHNNYNIPLGETSSGTGGSTAGGSGRATQQLNFMDAARTTASGATPSSSAQHHHRHAVGGGLYDPNSLYSTTQTNSFNMAGTQFFLPPRS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12647671 12648923 - Conep06aG0172400.1 Cone6ag1659 440543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1659 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 325 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone6ag1659 331 MobiDBLite consensus disorder prediction 245 267 - -
Cone6ag1659 331 MobiDBLite consensus disorder prediction 132 170 - -
Cone6ag1659 331 MobiDBLite consensus disorder prediction 1 29 - -
Cone6ag1659 331 MobiDBLite consensus disorder prediction 281 302 - -
Cone6ag1659 331 Pfam Domain of unknown function (DUF702) 92 241 - -
Cone6ag1659 331 MobiDBLite consensus disorder prediction 144 162 - -
Cone6ag1659 331 MobiDBLite consensus disorder prediction 247 267 - -
Cone6ag1659 331 NCBIfam LRP1 C-terminal domain 192 240 IPR006511 -
Cone6ag1659 331 NCBIfam putative zinc finger domain, LRP1 type 94 136 IPR006510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1176 Cone-Chr12:9305353 Cone6ag1659 Cone-Chr6:12647671 2.78E-14 dispersed
Cone17ag1376 Cone-Chr17:9557174 Cone6ag1659 Cone-Chr6:12647671 6.54E-56 wgd
Cone20ag0106 Cone-Chr20:478496 Cone6ag1659 Cone-Chr6:12647671 4.16E-53 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone6ag1659 Cone-Chr6:12647671 1.36E-55 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone7ag1860 Cone-Chr7:12025045 2.99E-58 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone8ag0832 Cone-Chr8:8313349 3.51E-61 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone8ag1222 Cone-Chr8:10333267 1.67E-41 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone9ag1584 Cone-Chr9:11367151 1.03E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46423 PF03357 Snf7 4.70E-42 CL0235 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1659 K27807 - csv:101207689 222.631