Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1662 ATGGCTACAGTCTCCTCGGCTCCTTCATGGAATCCTGAAGATGACCTGCTCTTGAAGAACGCCGTAGAGGCGGGAGCTTCATTGGAAGCATTGGCTAAAGGTGCTGTGCGATTCTCGCGAAGATTTACGATTATGGAATTGCGAGAGCGGTGGCATTCTCTCCTGTACGATCCTGTTACTTCAGCTGAAGCTTGTGCTCAGATGATGGAATTTGAACGTTCTTATCCCAATTCTTCGTCCAAGTCTTTCCGATTTGGCAATCCTAAAGAGTGCAATGGAATTTCTTGGAAAAGAAAATCCGATAGCATTCGTAGTCAGTTTTATGGAATGAGGAAAAGGATGCGCAGCCAAGATTTCAGTCCTTTTGATCCTAATTTTCTTGGTGTCTCCAGTGGAAATGAGATTGGAAATAGCGATGGTTGTGAAGATGAAGGGATGGCTACAGATGCTTTGGTTCACTTTGGAAGTTCATGTATAGGAGGAGGACCACCTTGTGAGCTGGCAGATGTGGAAAAGGGATTAAAGGAGGATGAGAGTTGTGGTAAAATGACTGGTTCTGTTGCTGTCTTAGGCAGTGAGTTTTCATATCATCCTGATTCGCTTTTGAACATTCCAAATGAGGAAGAGGACCAGTTCATGGAGGTTGAGGGTAAAGATGTAACGGATAAGTATGACGGGGTTAATTCACTTCTATTGAGCTCTCCAATTGATGTTTCTTTAGATGCAGCCTCCAATAACTGTGAAGATCAAGCCTTAGATTCAAACAAAATCGGCGATAATACAGAAGATGTTTGCACTACGGGGATTGCTGAAACTGCTGAATTAACATGCTCTGTTCCTGATGATCAGCTAACTGTTAGTTGCTCTGAAGTCAATATGCAATTGCCCACATCCCTGCCTACTTCTCATTCTCCTGAACTTCATAAAGGGGAAATGATTTGCATATTGAACAGTGAGGACCCTGACATCCCATCCAATGATGATGTATTCATGCCTAATCGATTTGCTTCACTAATTTCTAGACCAAGTTCAAAAGAGACCAGAAGTCCAGGCTCTTTACCCGCCATTCAAAGAAATATTGAAGAAATCAGACTGAAAAAAGAAGAAAAACCTCCACAATCTGCTACAGCTTCTCAAATGTTAGCTCCAGAGATTCTTCTTGTAAGCATTCCGAATAATCAACTTCTCAGTGACAAAATAAAAAATGAGGTTGATAGTGGTTGTGCCACCCCTAGTTTTAGCAGATTAGCTCATGGAAAATTAAACTCTGTTCCTGATGTGGTGCTAAGAGAAGAGTTTGGTCATACATCAATGGCAGTTAGGGAACAAACCCCTTTGCACGAATCGGCAAGTTCGTATAGGACAGCAGTTTCAGGAACAGAAGCAAATCCTGTCATTCCCAATCATGAAGAATCTGATGTATCTGATGTTGAGGGTGATATTCCGAGCTTTTCTGACATCGAGACAATGATACTTGAAATGGATTTATGTCCGAATGATCAAGATTCTTCTCTCGGAAAAGAAGTCTCAAGATATCAACATATGGATGCTAAGAAAAACATTATGAGGTTGGAACAGTGTGCCCGATCAGCTATGCACAGGGCCATTGCTTCTCAAGGTGCATTTGCTGTCTTGTATGGCCGCCATCTAAAGCAATACATCAATAAAACTGAGGTTATACTTGGTAGAGCAACAGAAGATGTCGAAGTCGATATTGACTTGGGGAGAGAAGGCCGTGCCAACAAAATATCTAGACGACAGGCTGTTATAAGGCTGGAAAAAGACGGTTCTTTTGTTTTGAAGAATGTTGGCAAGAGTTCAATCTTTTTAAATGGCAGAGAAGTTTGTAGTGGACAGCTACTCAGCCTTGGTTCCAACAGCTTGATTGAGATTAAAGAGATGGCATTTGTGTTTGAGATGAATCATAAATCCGTGATGCAGTATCTGACAAATAACACAAGAAAAGGCCCGGGAAATCCCAGTTTTGAGTGGTCGCCTGAGAAGATCCCTTTATAA 2016 41.82 MATVSSAPSWNPEDDLLLKNAVEAGASLEALAKGAVRFSRRFTIMELRERWHSLLYDPVTSAEACAQMMEFERSYPNSSSKSFRFGNPKECNGISWKRKSDSIRSQFYGMRKRMRSQDFSPFDPNFLGVSSGNEIGNSDGCEDEGMATDALVHFGSSCIGGGPPCELADVEKGLKEDESCGKMTGSVAVLGSEFSYHPDSLLNIPNEEEDQFMEVEGKDVTDKYDGVNSLLLSSPIDVSLDAASNNCEDQALDSNKIGDNTEDVCTTGIAETAELTCSVPDDQLTVSCSEVNMQLPTSLPTSHSPELHKGEMICILNSEDPDIPSNDDVFMPNRFASLISRPSSKETRSPGSLPAIQRNIEEIRLKKEEKPPQSATASQMLAPEILLVSIPNNQLLSDKIKNEVDSGCATPSFSRLAHGKLNSVPDVVLREEFGHTSMAVREQTPLHESASSYRTAVSGTEANPVIPNHEESDVSDVEGDIPSFSDIETMILEMDLCPNDQDSSLGKEVSRYQHMDAKKNIMRLEQCARSAMHRAIASQGAFAVLYGRHLKQYINKTEVILGRATEDVEVDIDLGREGRANKISRRQAVIRLEKDGSFVLKNVGKSSIFLNGREVCSGQLLSLGSNSLIEIKEMAFVFEMNHKSVMQYLTNNTRKGPGNPSFEWSPEKIPL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12662420 12666183 + Conep06aG0172700.1 Cone6ag1662 440546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1662 671 ProSiteProfiles Forkhead-associated (FHA) domain profile. 559 615 IPR000253 GO:0005515(InterPro)
Cone6ag1662 671 SUPERFAMILY SMAD/FHA domain 551 641 IPR008984 GO:0005515(InterPro)
Cone6ag1662 671 SMART FHA_2 558 615 IPR000253 GO:0005515(InterPro)
Cone6ag1662 671 Pfam N-terminal region of micro-spherule protein 10 75 IPR025999 -
Cone6ag1662 671 Pfam FHA domain 560 631 IPR000253 GO:0005515(InterPro)
Cone6ag1662 671 CDD FHA_MCRS1 537 641 - -
Cone6ag1662 671 PANTHER MICROSPHERULE PROTEIN 1 6 655 IPR037912 GO:0002151(InterPro)|GO:0031011(InterPro)|GO:0044545(PANTHER)|GO:0045944(PANTHER)|GO:0071339(InterPro)
Cone6ag1662 671 Gene3D - 499 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1662 Cone-Chr6:12662420 Cone9ag1585 Cone-Chr9:11376055 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1068 . . Bda04g00031 . . . Bma09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1662 Cone9ag1585 . . . . Blo05g00819 . . . . Bpe06g00029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67