Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1663 ATGCTCCTCCTCTTTCTCTCACCTCACTCTAAAGCTTGCCATCCAACAGACAAAGAAGCATTACTCAAATTCAAAAGCAGAATCACTTCTGACCCATCAGAGCTATTATACTCATGGAAATCCACAACTGATTGCTGCACTTCATGGGAAGGGATTCAATGCGACCCTTCTTCAAACAGAGTCATCAACTTAACACGTTCCGGTCTTGTTTCAGGCGACAACTTCATTGTAGACACCTTCATGTCTGGAACGTTGTCTCCTTTCCTTGGAAACTTATCATCTCTTCAGCTTCTTGACTTGAGCAATCTCAAAGAATTGAAGGGTTCGATTCCAGAAGAGTTTGGCAAGTTAACCAAGCTCACTCGACTCTTTCTCGATTCTAACAAGCTCACCGGACCTATACCTGGAAGCTTCCAGAACCTTTTTCGGATCGAAAAGCTCTATCTTGGAAACAATAATCTGTCTGGTATTATTCCTCCCGCTGTTATTGGCTCTTTCAGGTCACTTTCTGAGCTGGGTTTATCTGGAAATGGGTTTTCTGGCTCAATCCCAAAAACAATTGGGAAAATGGTTTTGTTGAATAATCTTGATCTTCATGCTAATAACTTATCAGGGCGTATTCCTAAGAGTATAGGGAAGATGAAGAGCTTGAGGTATCTTGACTTGTCTGAAAATCAGATAAGTAAGAACATTCCAGAAACAATAGGTGGACTTTCTGAGCTGGTTTTGCTTTACCTTAACCACAATCAGATCAATGGACGCATTCCTTCATTAATATCAAATCTTACTTCTCTAATATTTTGTCGTTTATCCGAAAACAAGTTAAGAGGAAATCTGCCATTATCAATTGGCCAACTCCCTCAGATTCAAAGACTAATCCTTGAAAACAACAAACTTTCTGGAAAATTGCCTCCCACAATTGGCCATTTGACTACTCTTACTGATCTGTTCTTCTCTAATAACAAATTTTCGGGGGAAATTCCTTCAACTTTTGGAAACTTGGAGAATCTACAGACCCTTGATTTGTCAAGAAATTTACTTTCCGGGAAAGTTCCTTATCAGCTGGCTAAGTTGCAGAGTTTACAAAGCTTGGATCTTTCCTTCAATCCCCTTGGATTAGTAAACATACCGGATTGGTTTTCAAAATTAAAGCTTTTCAGATTGCTATTAGCAAAAACTGGGATTAGAGGGGAGCTTCCAGAATGGCTGTCATCATCATCGGTATCAGTACTTGATTTATCCTTCAATGCATTAACAGGGAAGCTGCCCATTTGGATTGGAAACATGACCAATCTTTCATTCCTCAATTTATCAAGCAATGCATTTCATTCATTAATCCCAGTTCAATTCAGAAACCTTTCACTCCTCATGGATCTCGACCTTCATTCAAATCGATTTTCGGGTAGCTTGAACAACATTTTCATGAAAGAAACTCAAGACCCACTTGGCCATTTCAACTCCATTGATGTTTCTAAAAACATGTTCGGTGGTTTCATCGATGCTGATATAGGAGACAGGCCAGCTATGGCTTCGATCAAATCGCTCGTTTTATCAGACAATCTTTTGAGAGGAAATGTTCCAAAGTCAGTTGGGAAACTGAACGAGCTTCAGGTTCTAGATGTTATGAGAAACGAGATTTCTGGGAAGATTCCTATTGAGCTTGGAAACGCAGAGGAGTTGACTGCCGTTTTGCTATCTGGAAACGATCTTAGCGGTGAAATCCCAACGAAGGTTTTGAATTTGAAGAATCTTGAGAAATTCGACGTGTCGGAAAACAGACTTAGCGGGAAAATTCCTCCTCACAAAGCTCATCTTCCTGCCTCTGCTTTCTTTCACAACCCTGGCCTCTGTGGTGTCCCACTTCCTCCATGTAATAAATAG 1881 40.35 MLLLFLSPHSKACHPTDKEALLKFKSRITSDPSELLYSWKSTTDCCTSWEGIQCDPSSNRVINLTRSGLVSGDNFIVDTFMSGTLSPFLGNLSSLQLLDLSNLKELKGSIPEEFGKLTKLTRLFLDSNKLTGPIPGSFQNLFRIEKLYLGNNNLSGIIPPAVIGSFRSLSELGLSGNGFSGSIPKTIGKMVLLNNLDLHANNLSGRIPKSIGKMKSLRYLDLSENQISKNIPETIGGLSELVLLYLNHNQINGRIPSLISNLTSLIFCRLSENKLRGNLPLSIGQLPQIQRLILENNKLSGKLPPTIGHLTTLTDLFFSNNKFSGEIPSTFGNLENLQTLDLSRNLLSGKVPYQLAKLQSLQSLDLSFNPLGLVNIPDWFSKLKLFRLLLAKTGIRGELPEWLSSSSVSVLDLSFNALTGKLPIWIGNMTNLSFLNLSSNAFHSLIPVQFRNLSLLMDLDLHSNRFSGSLNNIFMKETQDPLGHFNSIDVSKNMFGGFIDADIGDRPAMASIKSLVLSDNLLRGNVPKSVGKLNELQVLDVMRNEISGKIPIELGNAEELTAVLLSGNDLSGEIPTKVLNLKNLEKFDVSENRLSGKIPPHKAHLPASAFFHNPGLCGVPLPPCNK 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12666974 12668854 + Conep06aG0172800.1 Cone6ag1663 440547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1663 626 Pfam Leucine rich repeat N-terminal domain 14 55 IPR013210 -
Cone6ag1663 626 SMART LRR_sd22_2 238 264 - -
Cone6ag1663 626 SMART LRR_sd22_2 358 378 - -
Cone6ag1663 626 SMART LRR_sd22_2 581 596 - -
Cone6ag1663 626 SMART LRR_sd22_2 117 143 - -
Cone6ag1663 626 SMART LRR_sd22_2 310 336 - -
Cone6ag1663 626 SMART LRR_sd22_2 429 450 - -
Cone6ag1663 626 SMART LRR_sd22_2 214 233 - -
Cone6ag1663 626 Gene3D Ribonuclease Inhibitor 273 375 IPR032675 -
Cone6ag1663 626 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 280 - -
Cone6ag1663 626 SUPERFAMILY RNI-like 98 495 - -
Cone6ag1663 626 Gene3D Ribonuclease Inhibitor 376 626 IPR032675 -
Cone6ag1663 626 SMART LRR_typ_2 141 165 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 286 310 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 581 612 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 453 476 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 334 357 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 214 237 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 117 140 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 238 262 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 358 382 IPR003591 -
Cone6ag1663 626 SMART LRR_typ_2 429 452 IPR003591 -
Cone6ag1663 626 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 354 626 - -
Cone6ag1663 626 SUPERFAMILY L domain-like 487 603 - -
Cone6ag1663 626 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 Pfam Leucine rich repeat 193 251 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 Pfam Leucine rich repeat 125 178 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 Pfam Leucine rich repeat 407 466 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 Pfam Leucine Rich Repeat 583 601 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 Pfam Leucine Rich Repeat 289 310 IPR001611 GO:0005515(InterPro)
Cone6ag1663 626 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 7 265 IPR053211 -
Cone6ag1663 626 Gene3D Ribonuclease Inhibitor 184 272 IPR032675 -
Cone6ag1663 626 PRINTS Leucine-rich repeat signature 217 230 - -
Cone6ag1663 626 PRINTS Leucine-rich repeat signature 334 347 - -
Cone6ag1663 626 Gene3D Ribonuclease Inhibitor 14 183 IPR032675 -
Cone6ag1663 626 FunFam LRR receptor-like serine/threonine-protein kinase 284 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1740 Cone-Chr1:58152275 Cone6ag1663 Cone-Chr6:12666974 7.30E-22 dispersed
Cone6ag1663 Cone-Chr6:12666974 Cone13ag1353 Cone-Chr13:9918318 9.98E-15 dispersed
Cone6ag1663 Cone-Chr6:12666974 Cone9ag1586 Cone-Chr9:11382855 2.05E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31