Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1664 ATGGAAAAGGAGGAAGAGTTAGGTACAGATTTGTGTAGAACTCGCATCCAAGACGATGAGCAGAAGCTGCAGCGCGCTACCTTTGGTTTCGACCGTTCGGGACAGAGCTTTCAGCTAATGCGCACGGATAATTGCCGGACTGTTGGAGTTATGGATTGTTCCCAGCTCGCCGGAGATGAAAAACCGGTGGCCGGTTCCGAGCTTCAGGTGACGGCGAGAATGGATGCTTCTGTGTCAACCGGCGCGATGATGAAGGTTGAGAAGCTGGTGGTTGCAGAAAACAGCTTGGGAAAGCGAAAGCGAGGCCGGCCGCAGAGAAGTCAAGGGAGAGCGACTCCCGTTCCGAAGAAAGAAAAGGAGAAGGAGGAAGATGATGTTTGCTTCATATGCTTCGATGGCGGCAGCCTCGTGCTTTGTGATACCCGGGGCTGCCCTAAGGCCTACCATCCTGCATGCATCAAGCGCGACGAGTCATTCTTTCAATCAAAGGCTAAATGGAGTTGCGGCTGGCACATTTGCAACAGTTGTCAGAACGCGTCCTATTTTATGTGCTATACTTGTACATATTCATTGTGCAAGTGGTGCACTAAAGATGCTGATTACGTCCGTGTAAGAGGAAGCATGGGATTTTGTGGAACATGTATGAGAACTATAATGCTCCTTGAAAATAGCGGGCAAGGAAACAAAGAAGCGATTCAAGTTGATTTTGATGATGTAACCAGCTGGGAGTATCTTTTCAAAATGTACTGGACTCCCTTGAAAGCAAAGCTATCATTAACTCTAAACGAGTTAACACTAGGAAAAAATCCATGGCAAGATGGTAGTGTTATGGAAAATGAAAATGCCAAAAGGAGAAAGACAAGGAAGCAACAAAATTTGCCTTATAAGATGAACTCTCAAATTATGGAAATGTCAAGCTGTAACAATAACAATGTTATGCCTTTACCTAAAGGAACAGAATGGGCTACAAAGGAACTCTTGGATTTTGTTGCGCATATGAAAAATGGTGATGCATCAGTGCTTTCTCCGTTTGACGTTGAGCTCCTATTGCTGGAATATATAAAGAGGCACAATCTCCGTGATCCTAAACAGAAATCTCAAATTCTCTGTGATTTGAGGCTTGTACATCTGTTTGGGAAACCAAGTGTGGGGCATTTTGAAATGATGAAGCTTCTTGAATCTCACTTCCTTATAAAAGAAAAGTCCTTAGTAGATGATATAGGTACTGTTTCTGAAGTTGCTAGTGACCAGGTGAAGTCCAAAGGGAACTGTGATCATCAGCAACCAATGGGTGACAGTGATAGGTGTAAACCACTTGAGAAAGCTAATGAGAGAGCACAACATATAGATTCTGATGAATATGCAGCAATCGATGTTCACAATATCAGCTTGATTTTCTTGCAACGTAAATTAATAGAAAGCCTACTTAATGATACTGACAGATTTCACGGAAAAGTTGTTGGCTCGTTTGTACGGTTACGAGTTTCAAGCAATGATACTAAGCAAGACATGTATAGACTTGCCCAAGTCATAGGTACAACAAAGATTGCTGAATCATATAAAGTTGGTGAAAGAACTTCCAACCTAATGCTTGAGGTACAAAATTTGGACAAGAAAGAAGCATTATCAATTGACAGCTTTTCTGATCAAGACTTCTCAGAGGAGGAATGTAGGTGTCTACGCGAAAGTGTGAAGTGTGGGCTCATCAGGCGATTTACTGTGGGTGAGATTCGGGATAAAGCCTCGACACTTCAGGCAGTAAAAGCTAATGATATTCCTATCTCAGCTGAGGAGCGGCAGCGTAGGCTTCATGAAATTATTGAAGTCCATACTGATCAAAATACAGATCCAAGTCAAGTATCCGAAGAAAATGCTAAAAAACTAAACAAGATTAATCAAGAAGGAATAATGACGCCAAATGATTCTGTCTCTCACAGAAAGGATAGGGAGTTAATCTATCAGCAACAAGGAGGAAATGTTTTAAATTTTATTGGAAACACTGTATCCAATAATCTAGCCTGTACTTCGGAGCGAAGTAAAAACATATGCACTCCTTTCAACCTTGATAAGGAAGGTGTTAATGGAACCATCAAGAAAGTGAATGAAACATCAACGAGGGAAAGAGAAGCTCTTGTATTAAATAGTTGGGATGCATCTCAAAAGCAGTCCAATTTTACTAGTCTATTGACCAGTAATGACAATCCTATTGTTGGTTCTGAGGCTCTACTGCCCCCTTTCACGTCTGAGATAGAGCACTTTGTTAATGAAGTCGAGGCGGATAGACTGTGGCACTACCAGGACCCAGCTGGAAAAATTCAGGGACCATTTTCCATCACTCAACTTCATAAATGGTATTCAAGTAGATGCTTTCCTACTAATTTGAGAGTGTGGAGGACTAATGAATCTCAAAGTGAGGCTGTATTTCTCAGTGATGCATTAAATGCGCTTTATAAATATGACAAGGAATCACAGTTTCTCTACAACATCCATGTGCTGTCTAAAGAAGATAAGCCTAATTTCAGTGGCTGTGATGATAAGAAGGATCTTGTAAAGGGCAACGGATCAGCTTCCCAATCTTCAGATGGGCCTCCATCCACAAGTCAAAGAAGCGGTTTGGAACAAGTTCAGGACCCATTGAAGGATAAGAATTCATGGCATGGTGAATCCCAAGGGCATTTTTCAGTTCCTTCTCCTCCATTACCTGAAAAGCCTCTTGAATTGTCACGTGTGTCAGAGGTTCATGCTATGGAAAGACACTCTAGTCCAAGTAAGGTGAATCATAATTCACAGAAGAATGCTGAGGGGGAAACTATTAGTTGTAATAGTTATGAGAAATCCGACAGTGAGGATTGTTCCGATCAATCTTCACATGGGTGGGATTCTAAGTCTAGTGTTGTTTCCTTGCCTACGACAATTGAGCTACCGGAGCAAAGTCAGGAAATTCATATCCCCAATCTTCCTACTACTTCTGGGTCAAAGTTGGACCATGTAGACTTGAATGATCAATCCACTGAAATCAAGCCATCTCCTTTTTCTTGCGTCACTGACCAGGCATCAGATCCCATCTGGACATCTTCCACTTTAGTTGCCCCTATGCCTACCAAACCTTCCATTCAGGAACAGGACTCCAGTCTCATTGCTGAGTCTTCACTAAAACCTGTTGAAATTATAAATGCCAATGTTGCTACTCCAGCTTCAGTAAATGACCTGCCAAATGATTCTCATGTCTCTAGTTGGCAGGCAATTATTGATGGGCCTGATGATGAATTTGACTCCCTAGTAGACGAATCAGTTTCGGACTTGTTAGCTGAAGTTGAAGCAATGGAGACTTTACATGCTTTGGCTTCTTCCTCAACCTCAATGATCAACTGTGGTGGGGAATTAACCCTGGGTTCTAAAAACTATTTTTTCACTTCCGAACCCGGGTTTAGCCCCGCAACTGAAATCGGAAAGAGCATTCATTTGACCTCCAGTACTGATTTACAGATGACATCTCAACCTGCTACTATACCACCCACCTCCCATTTATCATCATCTAGTGTAGTAGTGGAAAATGCACCAATTCAACCTTCTGTTCCTTCCCCTTCAAGTCTAAACATAGCTTTAGGGGACACAGGTTGGAGAACGGGATCAGAAAATGCAGTGCCTGATTGGAGCCCAGTACAGGAAAATAATGCAAATATGAATTGGGAGTACTCAAATCAAGGAAATGCTGATTCTGGTTTTGGAAATTTTCCGGCTAGAGGAAATCCAGTAGGGTTTTATTCTAGCCAACCAAGATATAATGCTGATAGGTTTCCAAGTCCGAGAGAACGAAGTTTTCAGGACAGAGACTATGGTTTTGGTAAAGGTAGTAGGTCTTCTTCATGGAATAGGTCACAACCTTCATATGGTGGTGGAAATGGTGGGAGTTCTTCTCGACCGTCTCCACGAGGGCAACGGGTTTGTAAATTTTATGAAAATGGATATTGCAGAAAGGGGGCGTCTTGTAGTTATTTGCACCCATAA 4008 42.22 MEKEEELGTDLCRTRIQDDEQKLQRATFGFDRSGQSFQLMRTDNCRTVGVMDCSQLAGDEKPVAGSELQVTARMDASVSTGAMMKVEKLVVAENSLGKRKRGRPQRSQGRATPVPKKEKEKEEDDVCFICFDGGSLVLCDTRGCPKAYHPACIKRDESFFQSKAKWSCGWHICNSCQNASYFMCYTCTYSLCKWCTKDADYVRVRGSMGFCGTCMRTIMLLENSGQGNKEAIQVDFDDVTSWEYLFKMYWTPLKAKLSLTLNELTLGKNPWQDGSVMENENAKRRKTRKQQNLPYKMNSQIMEMSSCNNNNVMPLPKGTEWATKELLDFVAHMKNGDASVLSPFDVELLLLEYIKRHNLRDPKQKSQILCDLRLVHLFGKPSVGHFEMMKLLESHFLIKEKSLVDDIGTVSEVASDQVKSKGNCDHQQPMGDSDRCKPLEKANERAQHIDSDEYAAIDVHNISLIFLQRKLIESLLNDTDRFHGKVVGSFVRLRVSSNDTKQDMYRLAQVIGTTKIAESYKVGERTSNLMLEVQNLDKKEALSIDSFSDQDFSEEECRCLRESVKCGLIRRFTVGEIRDKASTLQAVKANDIPISAEERQRRLHEIIEVHTDQNTDPSQVSEENAKKLNKINQEGIMTPNDSVSHRKDRELIYQQQGGNVLNFIGNTVSNNLACTSERSKNICTPFNLDKEGVNGTIKKVNETSTREREALVLNSWDASQKQSNFTSLLTSNDNPIVGSEALLPPFTSEIEHFVNEVEADRLWHYQDPAGKIQGPFSITQLHKWYSSRCFPTNLRVWRTNESQSEAVFLSDALNALYKYDKESQFLYNIHVLSKEDKPNFSGCDDKKDLVKGNGSASQSSDGPPSTSQRSGLEQVQDPLKDKNSWHGESQGHFSVPSPPLPEKPLELSRVSEVHAMERHSSPSKVNHNSQKNAEGETISCNSYEKSDSEDCSDQSSHGWDSKSSVVSLPTTIELPEQSQEIHIPNLPTTSGSKLDHVDLNDQSTEIKPSPFSCVTDQASDPIWTSSTLVAPMPTKPSIQEQDSSLIAESSLKPVEIINANVATPASVNDLPNDSHVSSWQAIIDGPDDEFDSLVDESVSDLLAEVEAMETLHALASSSTSMINCGGELTLGSKNYFFTSEPGFSPATEIGKSIHLTSSTDLQMTSQPATIPPTSHLSSSSVVVENAPIQPSVPSPSSLNIALGDTGWRTGSENAVPDWSPVQENNANMNWEYSNQGNADSGFGNFPARGNPVGFYSSQPRYNADRFPSPRERSFQDRDYGFGKGSRSSSWNRSQPSYGGGNGGSSSRPSPRGQRVCKFYENGYCRKGASCSYLHP 1335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12672959 12678548 - Conep06aG0172900.1 Cone6ag1664 440548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1664 1335 Pfam Plus-3 domain 461 564 IPR004343 GO:0003677(InterPro)
Cone6ag1664 1335 SMART rtf1 456 566 IPR004343 GO:0003677(InterPro)
Cone6ag1664 1335 ProSitePatterns Zinc finger PHD-type signature. 127 187 IPR019786 -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 840 964 - -
Cone6ag1664 1335 Gene3D - 457 586 IPR036128 GO:0003677(InterPro)
Cone6ag1664 1335 Gene3D SWIB/MDM2 domain 315 404 IPR036885 -
Cone6ag1664 1335 SUPERFAMILY CCCH zinc finger 1310 1334 IPR036855 GO:0046872(InterPro)
Cone6ag1664 1335 ProSiteProfiles GYF domain profile. 760 814 IPR003169 GO:0005515(InterPro)
Cone6ag1664 1335 ProSiteProfiles Plus3 domain profile. 456 589 IPR004343 GO:0003677(InterPro)
Cone6ag1664 1335 Pfam SWIB/MDM2 domain 346 396 IPR003121 -
Cone6ag1664 1335 ProSiteProfiles SWIB/MDM2 domain profile. 315 398 IPR003121 -
Cone6ag1664 1335 SMART swib_2 340 401 IPR019835 -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 852 874 - -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 96 117 - -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 907 921 - -
Cone6ag1664 1335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1312 1335 IPR000571 GO:0046872(InterPro)
Cone6ag1664 1335 SMART PHD_3 126 172 IPR001965 -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 1265 1279 - -
Cone6ag1664 1335 Gene3D - 762 818 IPR035445 -
Cone6ag1664 1335 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 45 592 - -
Cone6ag1664 1335 Pfam GYF domain 763 803 IPR003169 GO:0005515(InterPro)
Cone6ag1664 1335 CDD PHD5_NSD 126 171 - -
Cone6ag1664 1335 SMART gyf_5 761 816 IPR003169 GO:0005515(InterPro)
Cone6ag1664 1335 CDD SWIB-MDM2_like 321 396 - -
Cone6ag1664 1335 ProSiteProfiles Zinc finger C3H1-type profile. 1310 1335 IPR000571 GO:0046872(InterPro)
Cone6ag1664 1335 SUPERFAMILY Plus3-like 457 586 IPR036128 GO:0003677(InterPro)
Cone6ag1664 1335 SUPERFAMILY SWIB/MDM2 domain 321 397 IPR036885 -
Cone6ag1664 1335 SUPERFAMILY FYVE/PHD zinc finger 120 177 IPR011011 -
Cone6ag1664 1335 SUPERFAMILY GYF domain 756 816 IPR035445 -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 1253 1312 - -
Cone6ag1664 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 216 IPR013083 -
Cone6ag1664 1335 FunFam Zinc finger CCCH domain-containing protein 19 116 216 - -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 1282 1311 - -
Cone6ag1664 1335 MobiDBLite consensus disorder prediction 922 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1664 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1185 Cone-Chr12:9349563 Cone6ag1664 Cone-Chr6:12672959 2.00E-162 dispersed
Cone6ag1664 Cone-Chr6:12672959 Cone8ag1230 Cone-Chr8:10370478 3.92E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46424 PF02229 PC4 4.40E-25 CL0609 Cone TR