Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1667 ATGACGAAGGGGCTGATGATAGCTTTGTTAGGGTTTTTGCTTATGGCGTTATCGTCAACCTCCATTGATGCCTATCTAGCTCCTCGTACGATGCTTAACCGGTTGTCTGGACCCACTAATTTCTTGACACAGGAGGAGCTCTGGTTCGATCAGAGGCTCGACCACTTCTCTCCCTATGATCACAGGAGGTTTCAGCAACGTTACTATGAGTTCCTTGATTACTTCAGACAGCCAGATGGGCCAATCTTTTTGAAAATTTGTGGTGAAGGTCCATGTACTGGCATAGCCAATGATTATATCAGTGTTTTAGCGAAGAAATTTGGAGCAGCTGTAGTTTCACTCGAGCACCGATACTATGGAAAAAGCTCCCCTTATAAATCATTGACAACAGAAAACTTGAAATATCTGTCATCTAAGCAGGCCCTTTTCGATTTGGCTGTTTTCCGTCAATATTACCAGGAGTCCTTGAATAAGAAGCTCAACCGATTAAAGGTTGAAAATCCGTGGTTCGTCTTTGGTATCTCTTACCCTGGAGCTCTTAGTGCATGGTTCCGTCTTAAGTTCCCTCATTTGACTTGCGGAAGTCTTGCAAGCTCTGCAGTCGTTCTTGCTGTTTATAATTACACTGAATTTGACCTACAGGTTGGTGAGTCAGCTGGGCCAGAATGTAAAGCTGCATTACAAGAAACTAATCAACTTGTTGAAGAGAGGCTTGCAACAAATAAAAAGGCAGTCAAGTCATTTTTTGGCGCTTCTGAGCTCGACATTGATGGAGATTTCTTGTATTTCCTGGCAGATGCTGCTGTAATAGCATTTCAATATGGTAATCCAGATCGATTATGTACTCCTTTAGTGGCAGCAAAAAAGGCTGGTGATGATCTGGTGGATGCATATGCCAAGTATGTTAAAGAGTATTACCTTGGAACCTTTGGGGTTGATGTTCAAACCTATAACCAGAAACACTTGAAAAACACTGCACCGAGTGAAGATAACAGTGCTGACCGATTATGGTGGTTTCAAGTCTGTACAGAAGTTGCTTACTTTCAGGTGGCACCAGAAAATGATAGTGTCCGCTCCTCTAAAGTTGACACTAGATACCACTTGGATCTTTGCAAGAATGTTTTTGGAGAGGGCATCTATCCCGATGTTAAGGGTACTAACATATACTATGGAGGCACAAAAATTGCTGGTTCAAAAATAGTTTTCACAAATGGTTCACAGGATCCCTGGCGCCATGCTTCTAAGCAGATTTCCTCTCCAGACATGCCATCATACCTAGTCACTTGTCATAATTGCGGCCACGGTACTGATCTACGAGGATGTCCTCAATCTCCATTAAGCCCAGAAGGAAACGCTGAGCATTGCAGCTCCCCTGATGCAGTTAAAAAAGTGAGGCAACAGATTGTAGAACAGATAGACCTTTGGCTGTCCGAATGCCAAGTCACGGGTAGGAGTTACCTGTGA 1464 43.31 MTKGLMIALLGFLLMALSSTSIDAYLAPRTMLNRLSGPTNFLTQEELWFDQRLDHFSPYDHRRFQQRYYEFLDYFRQPDGPIFLKICGEGPCTGIANDYISVLAKKFGAAVVSLEHRYYGKSSPYKSLTTENLKYLSSKQALFDLAVFRQYYQESLNKKLNRLKVENPWFVFGISYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNYTEFDLQVGESAGPECKAALQETNQLVEERLATNKKAVKSFFGASELDIDGDFLYFLADAAVIAFQYGNPDRLCTPLVAAKKAGDDLVDAYAKYVKEYYLGTFGVDVQTYNQKHLKNTAPSEDNSADRLWWFQVCTEVAYFQVAPENDSVRSSKVDTRYHLDLCKNVFGEGIYPDVKGTNIYYGGTKIAGSKIVFTNGSQDPWRHASKQISSPDMPSYLVTCHNCGHGTDLRGCPQSPLSPEGNAEHCSSPDAVKKVRQQIVEQIDLWLSECQVTGRSYL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12686146 12688894 - Conep06aG0173200.1 Cone6ag1667 440551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1667 487 Gene3D alpha/beta hydrolase 48 475 IPR029058 -
Cone6ag1667 487 Pfam Serine carboxypeptidase S28 51 438 IPR008758 GO:0006508(InterPro)|GO:0070008(InterPro)
Cone6ag1667 487 SUPERFAMILY alpha/beta-Hydrolases 67 214 IPR029058 -
Cone6ag1667 487 Gene3D Serine carboxypeptidase S28, SKS domain 207 361 IPR042269 -
Cone6ag1667 487 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 43 478 - GO:0005773(PANTHER)|GO:0008239(PANTHER)
Cone6ag1667 487 FunFam Thymus-specific serine protease 293 480 - -
Cone6ag1667 487 FunFam Prolyl carboxypeptidase like protein 42 280 - -
Cone6ag1667 487 FunFam Clan SC, family S28, unassigned serine peptidase 207 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1667 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1667 Cone-Chr6:12686146 Cone9ag1589 Cone-Chr9:11404564 1.12E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46