Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1668 ATGCGAACAATTTGCGACGCTTGTGAGAGCGCGGCGGCGATTGTGTTTTGTGCTGCCGATGAGGCTGCTCTTTGTCAATCTTGTGACGAGAAGGTTCATATGTGCAACAAGCTAGCTAGCAGGCACGTAAGAGTCGGCCTTGCGGATCCGAGTGATGTTCCCCGTTGTGATATTTGTGAAAATGCACCCGCTTTCTTTTACTGTGAGATAGACGGAAGCTCGCTGTGTTTGCAATGTGACATGATTGTTCATGTTGGAGGTAAAAGAACACATAAGCGATACCTTCTACTTAGGCAAAGAGCCGAGTTTCCAGGAGATAAACCCGGCAGTGTTGAGGCCGATCCACCTCGATTACCTATGGATCCGAGCAAGACAAGAAGAGGACAACAAAACCTGACACCTCAAAATCACAGGATCAACTCACCTGTTGAAGATGTTATTGAAGATGGACATACCAGGTTGGATACTAAGATGATTGACCTCAATATGAAGCCTCACAGAATGCAAGGCCAGGCTTCAAATAATCAGGATCCATAG 537 46.55 MRTICDACESAAAIVFCAADEAALCQSCDEKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRAEFPGDKPGSVEADPPRLPMDPSKTRRGQQNLTPQNHRINSPVEDVIEDGHTRLDTKMIDLNMKPHRMQGQASNNQDP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12689471 12691452 - Conep06aG0173300.1 Cone6ag1668 440552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1668 178 FunFam B-box zinc finger protein 19 2 92 - -
Cone6ag1668 178 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 MobiDBLite consensus disorder prediction 105 149 - -
Cone6ag1668 178 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cone6ag1668 178 MobiDBLite consensus disorder prediction 124 140 - -
Cone6ag1668 178 CDD Bbox1_BBX-like 56 96 IPR049808 -
Cone6ag1668 178 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cone6ag1668 178 Gene3D Classic Zinc Finger 2 96 - -
Cone6ag1668 178 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 138 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1378 Cone-Chr17:9569772 Cone6ag1668 Cone-Chr6:12689471 1.68E-23 wgd
Cone20ag0105 Cone-Chr20:463874 Cone6ag1668 Cone-Chr6:12689471 5.94E-24 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone6ag1668 Cone-Chr6:12689471 2.79E-23 wgd
Cone6ag1668 Cone-Chr6:12689471 Cone8ag1235 Cone-Chr8:10391492 1.82E-54 wgd
Cone6ag1668 Cone-Chr6:12689471 Cone9ag1590 Cone-Chr9:11408047 3.29E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46425 PF00069 Pkinase 4.40E-26 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1668 - - - 0.0