Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1670 ATGGGGGCTGTTGATGGAGAGGAGGAAATGCCAGGAGTGGGTGACTCTGGGGAGAGGATATTTGTTTCAGTGCGGGTGAGGCCTTTGAATGAGAGGGAAATTGCAAGGAATGATGCATCAGATTGGGAATGCATCAATGATACCACTATCATACATAGAAACAGCCTTTCGGTTTCTGAGCGCTCCGTGTACCCTTCTGGCTATACATTTGACAGGGTATTTAGATATGATTGCTCGACGAGGAAGGTCTATGAAGAAGGTGCAAAGGAAGTTGCCCTTTCTGTTGTCAATGGCATTAATTCCACCATTTTTGCATACGGACAAACAAGCAGTGGAAAAACATACACCATGAGCGGAATTACTGAGTTCACGGTAGCAGACATTTATAACTACATGGAGAAGCATATGGAGAGAGAATTTATTCTAAAGTTCTCTGCTATAGAGATTTATAATGAATCTGTCAGAGACCTCCTCAGTGCAGATAATACACCTCTTAGACTCCTTGATGATCCAGAGAGAGGGACTATTGTGGAGAAAGTCACAGAGGAAAGTATAAGAGACTGGAACCATTTTAGAGAACTTTTATCCTTATGTGAAGCCCAAAGGCAGATAGGAGAAACATCCCTAAATGTAGCAAGCTCAAGATCGCATCAGATTCTTAGACTTACAATCGAAAGTTCAGCACGTGAGTTCTTAGGCAATGAGAAGTCGACTTCCCTTGCAGCAACTGTGAATTTTGTTGATCTTGCAGGAAGTGAACGTGCATCTCAATCATTATCTGCTGGTGCAAGGTTGAAAGAAGGTTGCCACATAAATAGGAGTTTACTTACTCTGGGAACTGTTATTCGTAAGCTCAGCAAGGGAAGAAATGGACACATCCCTTTTAGAGACTCAAAATTGACCCGCATACTGCAGTCTTCTTTAGAAGGCAATGCTAGAACTGCCATCATTTGTACGATGAGCCCGGCACGAAGTCATATGGAGCAATCACGAAACACCCTCTTGTTTGCAAGTTGTGCTAAAGAGGTGACAACTAATGCACAAGTGAATGTAGTGGTCTCTGATAAGGCATTGGTGAAGAAATTGCAAAGAGAATTGGCTCGATTAGAGACTCAGTTGAGAAGTTCAGGAGTAACTCCCTCAATATCTGATTCTGCTGCATTGCTGAGAGAAAAGGACTTTCAGATTGAGAAGCTGAAGGAAGAGATAAAGGAGTTAACTCTGCAACTAGACCTTGCTCGATCTCAGGTTCAGATATCTGGAGATGATGAACCTCCAAAAGCATTGTCAGTTGGCAATGAACAATACCCCAAACTGAGAGTAAGAGGTTCATGGGACTTGGGAAATCAAATATCAGTGGCACCATCGTCTGCAAATCTTAATTATCTAAATGTTAGTGTCGGATCTTTTGACGCATCTCAGTACTCGGATGGACACAGTCGAAGTAGTTCTGAGAATTATCAGCAACTTTTTGACTTTGAAGATAGTTTCAAACAAACCAATCAAGAGGTTTCGGTTAACACTCCTTTGTCTGATTCTGAAACACGTCCAGGGGGGATTCAAGAGCAGTCCAATGATGATGTAGAAGATATCTGCAAGGAAGTTAGATGCATTGAGATGGAAGAGTCTAGTGCCAAAAGATATGTAGATTCGAGTACGGAAGATTTAAGCCCAAACAGATATTCGGACTCATGCATGTCATCTATAGAAAATCTATGTGCCTCTGAACTGAAAGGGGTTGAAAATGGAGATGGAGGTAATGCTAAATTAGGGTTATCACCTCCTTTGAAGGAAGATAAGGAATTGAAAAACTTCCATTCAATTTTTGTTGTTCCATCATCCGAGAAATCATCTTCATGGTCTGATCTTGGGAACTTGAAGTTAACTAGAAGTAGAAGTTGTAAAGCGAGTTTTCGGACAAGTATGTCTTCGGATGGTTTTGAGAAGGTAGGAAAGAATGATACCACACCAACCTGGTGTGAGAAAGTTTTTCCTGGCAGACCTGAAAATTTCCTGAAGGAACCTCCTGCACACGAAAATATGTCTGACATCGAGAAGCTATCAAGAAATGGTTCTCAAACCTCAATAGGGAATGTTGCTGCTGATGAATTTGATGAATTTGATGCAGAGAACATTGATACATCAATTACTGAAAAGAAAATGGTTGAACACCAACTTCCTGACAATATGGTACTTGATACCGAATCAAAGCCAGTGGGGTCAGCAAAAAATCTAAAAGATGTTGGACTAGATCCAATTCCAGATGATTTAGAAAGTCCAGGATGGCCTGCAGAATTCAAGGCTCTACAAAGCAACATTATAGAACTTTGGCATTCTTGCAATATATCACTGATTCATAGGACCTACTTCTTCCTGCTGTTTAAAGGTGACCCAGCAGATTCTATTTACATGGAGGTTGAGTTCAGAAGGCTGTCCTTCCTCGGAGACACATTTTCTCGTGGAAATCAAACCATACAAGATGTTCGGCACTTGACAATATCTTCAAGCATGAGGGATTTGCGTCACGAAAGACAGATGTTGAGCAAGCAAATGCAGAAGAGACTCTCTAAGCAAGAAAGAGAGGCTCTTTTTGTAGAGTGGGGAATTTCCTTAAGTTCGAGTCATAGAAGGCTGCAGTTGGTTCACTGCTTGTGGACCGATACGAAAGATATGTACCATATAAGGAGGAGTGCTAATGCTGTTGCTAAGCTGGTTGGCTATGTTGAGCCAGAGCAAGGTTTTAAGGGAATGTTTGGTCTTAATTTTACACCACCTTGTAGAAGCCATAAATCTCGCGGATGGATGCACGGCATGATGTCTCACTCCTGA 2829 41.64 MGAVDGEEEMPGVGDSGERIFVSVRVRPLNEREIARNDASDWECINDTTIIHRNSLSVSERSVYPSGYTFDRVFRYDCSTRKVYEEGAKEVALSVVNGINSTIFAYGQTSSGKTYTMSGITEFTVADIYNYMEKHMEREFILKFSAIEIYNESVRDLLSADNTPLRLLDDPERGTIVEKVTEESIRDWNHFRELLSLCEAQRQIGETSLNVASSRSHQILRLTIESSAREFLGNEKSTSLAATVNFVDLAGSERASQSLSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLEGNARTAIICTMSPARSHMEQSRNTLLFASCAKEVTTNAQVNVVVSDKALVKKLQRELARLETQLRSSGVTPSISDSAALLREKDFQIEKLKEEIKELTLQLDLARSQVQISGDDEPPKALSVGNEQYPKLRVRGSWDLGNQISVAPSSANLNYLNVSVGSFDASQYSDGHSRSSSENYQQLFDFEDSFKQTNQEVSVNTPLSDSETRPGGIQEQSNDDVEDICKEVRCIEMEESSAKRYVDSSTEDLSPNRYSDSCMSSIENLCASELKGVENGDGGNAKLGLSPPLKEDKELKNFHSIFVVPSSEKSSSWSDLGNLKLTRSRSCKASFRTSMSSDGFEKVGKNDTTPTWCEKVFPGRPENFLKEPPAHENMSDIEKLSRNGSQTSIGNVAADEFDEFDAENIDTSITEKKMVEHQLPDNMVLDTESKPVGSAKNLKDVGLDPIPDDLESPGWPAEFKALQSNIIELWHSCNISLIHRTYFFLLFKGDPADSIYMEVEFRRLSFLGDTFSRGNQTIQDVRHLTISSSMRDLRHERQMLSKQMQKRLSKQEREALFVEWGISLSSSHRRLQLVHCLWTDTKDMYHIRRSANAVAKLVGYVEPEQGFKGMFGLNFTPPCRSHKSRGWMHGMMSHS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12695803 12700516 + Conep06aG0173500.1 Cone6ag1670 440554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1670 942 PANTHER CENTROMERE PROTEIN E 17 938 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone6ag1670 942 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 Pfam Domain of unknown function (DUF3490) 765 924 IPR021881 -
Cone6ag1670 942 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 Coils Coil 352 379 - -
Cone6ag1670 942 FunFam Kinesin-like protein 14 374 - -
Cone6ag1670 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 376 IPR027417 -
Cone6ag1670 942 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 Gene3D Kinesin motor domain 13 374 IPR036961 -
Cone6ag1670 942 SMART kinesin_4 17 351 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag1670 942 MobiDBLite consensus disorder prediction 502 522 - -
Cone6ag1670 942 Coils Coil 389 416 - -
Cone6ag1670 942 CDD KISc_CENP_E 20 343 - -
Cone6ag1670 942 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone6ag1670 942 MobiDBLite consensus disorder prediction 502 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1670 K11498 - - vvi:100854194 1073.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1670 Cone-Chr6:12695803 Cone8ag1224 Cone-Chr8:10345782 1.20E-76 dispersed
Cone12ag0729 Cone-Chr12:6687971 Cone6ag1670 Cone-Chr6:12695803 0 transposed
Cone17ag1382 Cone-Chr17:9583594 Cone6ag1670 Cone-Chr6:12695803 2.76E-209 wgd
Cone6ag1670 Cone-Chr6:12695803 Cone8ag1236 Cone-Chr8:10394395 4.55E-280 wgd
Cone6ag1670 Cone-Chr6:12695803 Cone9ag1592 Cone-Chr9:11412526 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40