Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1671 ATGGCGATGAAGCGTACTACTTTTCTACTGTTTTACGTGCTACTCTGCGCGCCGTCTCTATCCTACGCCGCTCACAGCGCTGAAAATCAGGCTGAGATCGACGCATTGACGTCGTTTAGGCTGAATCTGCACGATCCTCTAGGTGCTTTGAACGGTTGGGATTCTTCGACACCCTCGGCTCCATGCGACTGGCATGGAGTCGGTTGCAGCTCTGATAAACGAGTTACGGAGCTCCGTTTACCTCGTCTTCAACTCGGTGGTCGACTCAGCGAGAGGCTCGCTGACTTGCGTTTGTTGAGCAAGTTAAGCTTACGCTCCAACTTCTTTAACGGAACGATTCCTTCTTCGCTCTCCAAATGCACGCTTCTGAGCGCCGTTTACTTGCAGCTCAACTCACTCTCCGGCAACCTCCCGCCGGGCATCGGAAATCTGACTGATCTTCGGATCCTCAACGTTGCGGAGAATCATTTGTCTGGGGCAATCCCCGGTGACCTTCCTCCGAGCCTGAGGTACCTCGATCTTTCGTCCAACGCGTTATCTGGCGAGATTCCAAGGAGCGTCGCTAACCTGACTCAGATTCAGCTCATCAACCTCTCGTTCAACCAGTTCGGAGGAGAGATTCCAGCGAGCTTCGGGGAGCTTCAAGAGCTGCAACACCTCTGGCTCGAACACAATCTCCTAGAGGGAACTCTGCCTTCAGCCCTAGCTAACTGTTCGTCGCTCGTTCATTTGAGCGTCGATAGAAATGCGCTAGAAGGCGTGATTCCAGCTGCAATCGGAGCGCTTCCGAAGCTTCAAGTCATCTCGCTTACACAGAACAATCTCTCTGGATCAGTCCCGTCCTCAATGTTCTGCAATGTTTCAGTATATCCACCCTCACTCAGAATCGTTCAGCTAGGGTTAAATGCGTTCGCGGACATTGTTGAGCCAGGAACAGCAACGTGTTCTAGCGTCCTGCAGGTTCTAGATCTCCATGACAATCAGATAAACGGTGCGTTCCCTTCATGGCTGACCAGCGTAACAACTCTGAAGTTCCTGGACATTTCTGGTAATTCGTTCTCTGGTGTGGTCCCACCTGCGATTGGGAACCTTTCGAGGTTAGAGGAGCTGAAAATGGCTAATAACACTTTCGACAGCGTCGTTCCTAAAGAAATAAAGAAATGTAGCTCATTAACTGTTCTTGATTTCGAAGGGAATCGATTCACGGGAGAGATTCCAGAGTTTTTTAGCGAAATGAGAAGCTTGAAGGTGCTATCTCTAGGGGGAAATCTTTTCTTTGGTACAGTTCCGGAAGCTTTTCGCAACCTCTCCGAGCTTGAAACTTTGAATCTACATGGGAATAGCTTGTCTGGAAAGTTCCCAGGGGAATTAATGGAACTGAGGAATTTGACTACATTGGAGCTTAGTGGGAATAAATTTTCCGGCGAAGTTCCTTCAAGTATAGGGAACCTGAGTCGTCTAGAGATTCTAAATCTTAGTGGAAATCAGCTTTCCGGGAAGATTCCGGCCAGCATTGGAAATCTTTTCAGGCTAACCACCTTGGATTTGAGCAAACAGAATCTCTCTGGTGAGTTACCATTCGAGCTTTCAGGTTTACCAAATCTTCAATTCATTTCCCTTCAGGACAACATGCTATCTGATGATGTTCCTGAAGGGTTCAGTAGTTTGATGAGTTTACGTTATTTAAATCTCAGTTCCAATCTGTTTTCCGGTCATATTCCGGCAAATTACGGTTTTCTCCGGTCACTAGTTGTTCTCTCATTGTCTGATAATCACATTTCTGGGTTAATCCCCCCAGAGCTTGGAAACTGCTCTGACCTTGAAATTCTAGAAGCCCGTTCGAATTCTTTGACCGGCCAGATTCCGGCCGATCTCTCTCATTTGTCTCATTTGAAACAACTTGATTTAGGAATGAACAATTTAACAGGTAGCATACCAGAGGAGATCTCAAGATGCTCATTCTTAACAACATTGCTGTTTGACTCAAATCATCTTTCAGGTACCATACCGGCCTCATTGTCTCTGTTATCAGGCCTAAATACATTACTGCTCTCTTCAAACAACCTGAGTGGTGTGATTCCGGCTAGTCTTAGCTCTATTCTGGGATTAGTTAGCTTCAATGTCTCAAACAATGCCCTTGAAGGGGAGATTCCCGCTTCCTTAGGCTCTAGGTTCAGCTCATCTGTTTTTGCGAATAATTCAGGTTTATGTGGAAAGCCTTTGGGTCAGAAATGTGAGAGTACAGAAAATAAAGACAGAAGGAAGAAGCTGATTTTGCTGATTGTAGTTGTTGTTATTGGAGCTTCTGTCCTTTCATTGTGTTGCTGCTTCATATTCAGCCTCTTATGGTGGTGGAGGAAGAAGCTGAAAGAAGCAGCTTCCGGGGAGAAAAAGCGGAGCCCGGCAAGGGCAAGCTCAGGAGCAAGTGGAGGTCGTAGCAGTACCGACAGTGGAGGGCCAAAGCTTGTAATGTTCAATAACAAGATCACATTAGCTGAAACCATCGAAGCAACTAGGCAATTTGATGAAGAAAATGTACTTAGCCGATCACGTTATGGTCTAGTTTTCAAGGCTTGTTATAATGATGGAATGGTACTCTCAATTCGTCGCCTTCCTGATGGATCACTAGATGAAAATGCTTTCCGGAAAGAAGCTGAATCATTAGGGAAAGTCAAGCACCGAAACTTAACCGTTCTTCGAGGATACTATGCAGGCCCGCCCGATTTAAGACTCATGGTATATGACTACATGCCAAATGGAAATCTAGCTACCCTCCTTCAAGAAGCATCACACCAAGATGGTCATGTCCTCAATTGGCCCATGCGCCACCTCATCGCTCTCGGAATAGCCCGTGGGCTAGCTTTTCTCCACACGGCCACCCTTGTTCATGGTGATGTTAAGCCCCAAAACGTCTTGTTTGATGCAGATTTTGAGGCCCATTTGTCCGATTTTGGGCTGGACTGTCTTACAATTGCCATCCCGGCCGATGCAGCCTCAAGCTCCACATCAGTTGGGACATTGGGCTATGTTTCTCCCGAAGCTTTGTTGACGGGAGAAGCCACAAAGGAGTCAGATGTCTATAGCTTTGGGATTGTCTTGCTTGAATTGTTAACGGGGAAGAGGCCTGTGATGTTTACGCAAGACGAGGATATTGTGAAGTGGGTTAAGAAACAGTTGCAAAGGGGTCAAATTACGGAGCTTTTGGAGCCGGGTTTGTTGGAGCTTGACCCGGAATCATCGGAATGGGAGGAGTTCTTGCTTGGAGTGAAAGTCGGGCTGCTTTGCACCGCACCCGACCCACTTGATCGGCCCACAATGACTGACATTGTCTTCATGCTCGAAGGTTGTCGGGTTGGGCCCGATATTCCGTCTTCCGCTGATCCTACCTCTCAACCTTCTCCAGCATAA 3408 47.27 MAMKRTTFLLFYVLLCAPSLSYAAHSAENQAEIDALTSFRLNLHDPLGALNGWDSSTPSAPCDWHGVGCSSDKRVTELRLPRLQLGGRLSERLADLRLLSKLSLRSNFFNGTIPSSLSKCTLLSAVYLQLNSLSGNLPPGIGNLTDLRILNVAENHLSGAIPGDLPPSLRYLDLSSNALSGEIPRSVANLTQIQLINLSFNQFGGEIPASFGELQELQHLWLEHNLLEGTLPSALANCSSLVHLSVDRNALEGVIPAAIGALPKLQVISLTQNNLSGSVPSSMFCNVSVYPPSLRIVQLGLNAFADIVEPGTATCSSVLQVLDLHDNQINGAFPSWLTSVTTLKFLDISGNSFSGVVPPAIGNLSRLEELKMANNTFDSVVPKEIKKCSSLTVLDFEGNRFTGEIPEFFSEMRSLKVLSLGGNLFFGTVPEAFRNLSELETLNLHGNSLSGKFPGELMELRNLTTLELSGNKFSGEVPSSIGNLSRLEILNLSGNQLSGKIPASIGNLFRLTTLDLSKQNLSGELPFELSGLPNLQFISLQDNMLSDDVPEGFSSLMSLRYLNLSSNLFSGHIPANYGFLRSLVVLSLSDNHISGLIPPELGNCSDLEILEARSNSLTGQIPADLSHLSHLKQLDLGMNNLTGSIPEEISRCSFLTTLLFDSNHLSGTIPASLSLLSGLNTLLLSSNNLSGVIPASLSSILGLVSFNVSNNALEGEIPASLGSRFSSSVFANNSGLCGKPLGQKCESTENKDRRKKLILLIVVVVIGASVLSLCCCFIFSLLWWWRKKLKEAASGEKKRSPARASSGASGGRSSTDSGGPKLVMFNNKITLAETIEATRQFDEENVLSRSRYGLVFKACYNDGMVLSIRRLPDGSLDENAFRKEAESLGKVKHRNLTVLRGYYAGPPDLRLMVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHTATLVHGDVKPQNVLFDADFEAHLSDFGLDCLTIAIPADAASSSTSVGTLGYVSPEALLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMTDIVFMLEGCRVGPDIPSSADPTSQPSPA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12702590 12705997 + Conep06aG0173600.1 Cone6ag1671 440555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1671 1135 Gene3D Ribonuclease Inhibitor 290 458 IPR032675 -
Cone6ag1671 1135 SUPERFAMILY RNI-like 231 547 - -
Cone6ag1671 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 917 1121 - -
Cone6ag1671 1135 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cone6ag1671 1135 MobiDBLite consensus disorder prediction 796 821 - -
Cone6ag1671 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 189 - -
Cone6ag1671 1135 PRINTS Leucine-rich repeat signature 484 497 - -
Cone6ag1671 1135 PRINTS Leucine-rich repeat signature 169 182 - -
Cone6ag1671 1135 SMART LRR_typ_2 460 483 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 144 168 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 628 652 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 96 120 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 676 699 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 262 286 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 412 435 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 364 387 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 214 237 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 532 555 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 484 508 IPR003591 -
Cone6ag1671 1135 SMART LRR_typ_2 580 604 IPR003591 -
Cone6ag1671 1135 Gene3D Ribonuclease Inhibitor 459 754 IPR032675 -
Cone6ag1671 1135 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 679 699 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 558 576 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 390 411 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 486 508 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 630 652 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 582 604 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 SMART LRR_sd22_2 214 240 - -
Cone6ag1671 1135 SMART LRR_sd22_2 460 486 - -
Cone6ag1671 1135 SMART LRR_sd22_2 628 651 - -
Cone6ag1671 1135 SMART LRR_sd22_2 532 551 - -
Cone6ag1671 1135 SMART LRR_sd22_2 412 438 - -
Cone6ag1671 1135 SMART LRR_sd22_2 262 289 - -
Cone6ag1671 1135 SMART LRR_sd22_2 166 192 - -
Cone6ag1671 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1671 1135 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Cone6ag1671 1135 Gene3D Phosphorylase Kinase; domain 1 813 916 - -
Cone6ag1671 1135 SMART serkin_6 841 1112 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1671 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 470 749 - -
Cone6ag1671 1135 Pfam Protein kinase domain 851 1109 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1671 1135 MobiDBLite consensus disorder prediction 806 821 - -
Cone6ag1671 1135 SUPERFAMILY L domain-like 501 724 - -
Cone6ag1671 1135 FunFam Putative LRR receptor-like serine/threonine-protein kinase 804 916 - -
Cone6ag1671 1135 Pfam Leucine rich repeat 319 375 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 Pfam Leucine rich repeat 413 473 IPR001611 GO:0005515(InterPro)
Cone6ag1671 1135 ProSiteProfiles Protein kinase domain profile. 841 1122 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1671 1135 SUPERFAMILY L domain-like 30 304 - -
Cone6ag1671 1135 Gene3D Ribonuclease Inhibitor 185 289 IPR032675 -
Cone6ag1671 1135 Gene3D Transferase(Phosphotransferase) domain 1 917 1121 - -
Cone6ag1671 1135 FunFam Piriformospora indica-insensitive protein 2 357 454 - -
Cone6ag1671 1135 PANTHER OS04G0122200 PROTEIN 453 1112 IPR051809 -
Cone6ag1671 1135 SUPERFAMILY Protein kinase-like (PK-like) 822 1123 IPR011009 -
Cone6ag1671 1135 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1671 Cone-Chr6:12702590 Cone14ag1278 Cone-Chr14:10219443 1.41E-51 dispersed
Cone17ag1384 Cone-Chr17:9591820 Cone6ag1671 Cone-Chr6:12702590 2.37E-172 wgd
Cone20ag0097 Cone-Chr20:440664 Cone6ag1671 Cone-Chr6:12702590 3.89E-170 wgd
Cone6ag1671 Cone-Chr6:12702590 Cone9ag1593 Cone-Chr9:11419790 2.42E-276 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82982 PF13041 PPR_2 8.00E-11 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1671 - - - 0.0