Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1674 ATGAGAACTCGTAATGCAGGAAATCCGAAACCGACTCCTCCGAAAAGGACACAGCCAGCGAGGAAGGCTGCCGCAAGAACTCCTCCGAACTCTGCTGGTTCGGAATCGCTATCCGCGACTCCAAAATCCACCGAGTCAAAGCGTGCAGCCGCGGTGAGAACGAGGCAGGCGAAGAAGAATGCAGCCTTGACAGCCACGCCGGTATCCGATTCGAAACCTGAACAGCCATCAGGTGAAGAGGTCGAAGCATCCGTTGATGTTACTCAAACGACACCATCTAAGAAACTTGCTACTTTTACAAGATCAGCCGCTGGGAGAGCGGCTGGGAAAATTAAAACACCTACTTTGATCAGTACAACACCTGAATCCATAAAAGAAACGGATGAAGAACATAAAGGGGAGGAAGAAATAATCCTTAAGGATGTGGAGATCAGTAAGGAGGAAGCGGATGTTGAAGACGTTGGAGAACATAAAGAGGAGGAAAAGACTGTCGTTAAGGATGTGGAGATCAGTAAGAAGAACCCTGTCGTTGAATATGTTAGAGATATTGCTGAGAAGGAAGGAATTGAAGAATCTAAGGAGGAGGACGAGAAAGTTGGGAAGGATGTGGAGATAAGTAAGGAGGAACCTGTTGTTGAAAATGTTGGAGACATTTCTGAGATGGAAGGAGTGGAAGAACGTAAGAAGGAAGAGATAGTCGGGAAGGACGTGAAGATCAATAAGGAGGAACTTGCTGTTGAAAATGTTGTAGAACTGGCTGAGAAGGAAGGAATTGAAGAAGCTGAAGTGGAGAAAGTGATATTTGTTAAGGATGTGGAGGCCAACGAGGAGGAACCTGATATTGAAAATGTTGGAGAGTCTGCTGGCAAGGAACAAACCACCATGGAAGTGGACCAACCTTGTGCCGAAGATATTGGAGAATCTGCTGACAAGGAACAAACTGTCATGGAAGTGGATCAACGTTGTGCTAAAGATATTGGAGAACCTTCTAAGGAGAAAGAAAGTTCACTGGAAGTGGGAATTACTCCTATTATAAACATTGAAAGTTGTCCCAGAGTAGCGAATTCTATCGATGCAGATGTCGTGCAGTCTTTGGCCAATGCGGAATCTAGTGGTACAGAGGTGGAAGATGAAACTTCAAAGGAGGCAACATATGTTGAGGTTCAGGTGGAGACAAATGTTCAGTCGGGTGATGTGGAACACAATGTCAAAGAGGAGCTGGAAGGGCAACAGAGCAACCCTGTAAATGAGGAAGATGGCAGAAATGAAGACGGGTATGATGATAAGGTTGACCTTGGGGAACATGGGGATGTAGAGCTTTGTGAGGATGATCCTGCTGAAGAAACTGATGCGAAGGAAGAGGAACAAGGGGAATTTTCTGCGCAAGCAAAGGAGCGAAAGATTAGGAAGGAGCATGAGATATTTGTTGGTGGGTTGGATTGTGATGCTATGGAGGAAGATGTGAGAAAGGTGTTTGAGAGTATTGGAGAGATAGTCGACGTTAGATTGCATAAGAACCCTTTGAATAATAAGAATAAGGGGTATGCATTTGTGAAGTTTGCAAATAAGGTGCACGCTACCCGGGCATTGGCAGAAATGAAAAACCCTGTTATACGTGGAAAGAGATGTGGAACTGCACCAAGTGCGGATAATGACACATTGTTTCTGGGTAATATATGCATCACGTGGACAAAGGAAGCTACTGAAAAAAAATTAAAGGATTATGGCGTTGAAGGTGTAGAGAGCATCACTCTTGTTGCAGATGCACAAAATGATGGCTTAAACCGAGGGTTTGCATTTGTTGAATTTTCCTGTCATGTTGATGCCATGAATGCATACAAGAGGCTTCAACAACCTGATGCTATTTTTGGTCACCCTGAGAGAACTGCTAAAGTGGCTTTTGCTGAGCCCTTACGAGATCCAGACCCAGAGATCATGGCCCAGGTGAAGTCTGTCTTTGTTGATGGGGTTCCACCTCACTGGGATGACGCACATGTCAGGGAGCTTTGTCAAGGTTTTGGAGAAATTGTACGGATTGTGCTGGCCCGAAATATGTCAACAGCCAAAAGGAAGGATTTCGGATTTATTGATTTTTCCACCCATGAAGCTGCTATTGCTTGCATTGATGGTATCAACAATTCAGAATTCCGTGATGGAAACGTAAAGGGGAAAGTAAAGGCAAGGCTCTCAAACCCTTCGCCCAAAACTCAGGCTTTGAAAGGTGGAATTTGTGGTGGGTTTCGAATTGGTCATGTTGGGGGAAAACCTTCTAACAATTTTGGAAGGGGTTTTGTGAGGGGTGGACAGTCCTTCCTGCGGCCACACTTCACACATGGTCGTGTCTTTCATCAAGGTGGACGGGGTCAAGGTGGTAGATCAGGTTTTCCAAACAACTTTGAAGCAAATAATCCTTATCCTCAGTTTCTAGGGAGGCAAAATATTGGCAGAGGGGAAAGCATGGGAACTTTCAGAGGTGGGCATTATGACACTGGCAGAGGTGCTACTGCTCCCACCCCATCAAGGTCTTTTCTTGTTAGGCCATGGCATAATGCTACTGATAGAGGCTATGGATTGGAGTTCTCTTCTAGGAGGCCTCCTTATTCTACTGAGGGATACTTCAACAGACCATTTCCTGGACAGCATTTTGATGATCCTTATCTCCATAATAACAATGCACATGGGATAAAGCGCCCATTTTCTACGATGGACCATGATGCTGAGTTCATGGAGCCTGGTAGACTCCGTCAGCGATTTGATTATACTGATACAACAGCCTCGTTCCCGGGAAATAACTACAGAGATGCACATGGTTCTGGTAGCAGTCGCTTCCCTCATGAGCATTATGGTCCAGATGTAAGAAATAATTCTCAGTATCGTGGAGTACCATATTCATCTAACCATGGTGCTGGACCACCTAATGGAGGTGGATACTACTATTAA 2940 45.07 MRTRNAGNPKPTPPKRTQPARKAAARTPPNSAGSESLSATPKSTESKRAAAVRTRQAKKNAALTATPVSDSKPEQPSGEEVEASVDVTQTTPSKKLATFTRSAAGRAAGKIKTPTLISTTPESIKETDEEHKGEEEIILKDVEISKEEADVEDVGEHKEEEKTVVKDVEISKKNPVVEYVRDIAEKEGIEESKEEDEKVGKDVEISKEEPVVENVGDISEMEGVEERKKEEIVGKDVKINKEELAVENVVELAEKEGIEEAEVEKVIFVKDVEANEEEPDIENVGESAGKEQTTMEVDQPCAEDIGESADKEQTVMEVDQRCAKDIGEPSKEKESSLEVGITPIINIESCPRVANSIDADVVQSLANAESSGTEVEDETSKEATYVEVQVETNVQSGDVEHNVKEELEGQQSNPVNEEDGRNEDGYDDKVDLGEHGDVELCEDDPAEETDAKEEEQGEFSAQAKERKIRKEHEIFVGGLDCDAMEEDVRKVFESIGEIVDVRLHKNPLNNKNKGYAFVKFANKVHATRALAEMKNPVIRGKRCGTAPSADNDTLFLGNICITWTKEATEKKLKDYGVEGVESITLVADAQNDGLNRGFAFVEFSCHVDAMNAYKRLQQPDAIFGHPERTAKVAFAEPLRDPDPEIMAQVKSVFVDGVPPHWDDAHVRELCQGFGEIVRIVLARNMSTAKRKDFGFIDFSTHEAAIACIDGINNSEFRDGNVKGKVKARLSNPSPKTQALKGGICGGFRIGHVGGKPSNNFGRGFVRGGQSFLRPHFTHGRVFHQGGRGQGGRSGFPNNFEANNPYPQFLGRQNIGRGESMGTFRGGHYDTGRGATAPTPSRSFLVRPWHNATDRGYGLEFSSRRPPYSTEGYFNRPFPGQHFDDPYLHNNNAHGIKRPFSTMDHDAEFMEPGRLRQRFDYTDTTASFPGNNYRDAHGSGSSRFPHEHYGPDVRNNSQYRGVPYSSNHGAGPPNGGGYYY 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12719781 12725634 - Conep06aG0173900.1 Cone6ag1674 440558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1674 979 Pfam RNA recognition motif 652 718 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 Pfam RNA recognition motif 474 542 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 Pfam RNA recognition motif 564 618 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 MobiDBLite consensus disorder prediction 59 73 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 444 465 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 82 98 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 1 162 - -
Cone6ag1674 979 Gene3D - 639 746 IPR012677 -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 417 432 - -
Cone6ag1674 979 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 552 637 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 MobiDBLite consensus disorder prediction 322 341 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 274 297 - -
Cone6ag1674 979 SUPERFAMILY RNA-binding domain, RBD 642 759 IPR035979 GO:0003676(InterPro)
Cone6ag1674 979 FunFam Heterogeneous nuclear ribonucleoprotein Q 552 636 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 188 227 - -
Cone6ag1674 979 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 373 979 - GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)
Cone6ag1674 979 MobiDBLite consensus disorder prediction 925 979 - -
Cone6ag1674 979 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 650 732 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 SUPERFAMILY RNA-binding domain, RBD 473 617 IPR035979 GO:0003676(InterPro)
Cone6ag1674 979 MobiDBLite consensus disorder prediction 29 47 - -
Cone6ag1674 979 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 542 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 MobiDBLite consensus disorder prediction 405 432 - -
Cone6ag1674 979 CDD RRM_SF 652 722 - -
Cone6ag1674 979 MobiDBLite consensus disorder prediction 123 162 - -
Cone6ag1674 979 CDD RRM_SF 474 543 - -
Cone6ag1674 979 SMART rrm1_1 553 633 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 SMART rrm1_1 473 546 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 SMART rrm1_1 651 728 IPR000504 GO:0003723(InterPro)
Cone6ag1674 979 Gene3D - 551 636 IPR012677 -
Cone6ag1674 979 FunFam Heterogeneous nuclear ribonucleoprotein Q 637 787 - -
Cone6ag1674 979 Gene3D - 436 546 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1674 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1674 Cone-Chr6:12719781 Cone7ag1392 Cone-Chr7:9994572 6.94E-07 dispersed
Cone6ag1674 Cone-Chr6:12719781 Cone9ag1595 Cone-Chr9:11435870 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1092 . . Bda04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1674 Cone9ag1595 . . . . Blo05g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017281 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 6