Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1683 ATGGTCATTTCGCTAGTTCTCTTCAACATTTATGGACCTCGAGCTGAAAGCAATGATACAGAAAGGATCCAATTTAAGTTCAACTTTTACCAGATGTTGCAGAAAAGATGGGAATCTCTTGTGAATCAGGGAAGAAGAGTAACTGTTGTTGGTGACCTTAACATTGCACCCACTTCTATGGACCGTTGCGATGCAGGACCAGATTTTGAGAATAATGAATTTAGAAAATGGTTTAGATCCTTACTGGTGGAAAGTGGAGGCCAGTTCCTGGATGTATTCAGAACAAAGCATCCTGATAGAAAAGATGCATATACATGCTGGTCTCAAAGTACAGGTGCTGAGGTGTTCAATTATGGAAGTAGAATTGACCACATATTGTGTGTTGGATCATGCTTACATCAAGATCACAATGTACAAGGCCATAATTTTATAACTTGCCATGTTATGGAGTGCGACATATTGACACAGTATAAACGCTGGAAACATGGAGATACTTATAGGTGGAAAGGAGAACGGACTACCAAACTAGAGGGTTCTGATCATGCTCCTGTTTATATGACTTTAGGGGAAATCCCTGACATCAGCCAGCACAACACTCCATCTTTGTCTGCTAGATACATTCCTATGATTCATGGTGTTCAACAGACTCTAGTGTCTTTGTTAACAAAAAGACAAGCTACTGATGAAAGGATATCCCATGAGCTGTCAAGTTCGTTAGAACATGGAAATATCACTATAGAGAGTTGCTCTCAGAGAGTGAATAGATCCTCTGACAATTTTAGTATATCTGGAACTCCTCCTGGTGAATCTTGTTCTATTTCAATCCAAGAATCCGAAGCCTTAATATTAGAAACAGAGGAGAATCTCAGGAACCTCCCTAAAGAGACTAAATATAGTGCCTCAGTCACTTCTGGGAATGAACATATCAAACCAATGTTGGGTGATGATAGAAGGAAGAAGGTGAGAAAAAGTCAATGTGTTCAGATATCACTCAAGTCATTTTTCCAGAAGAGTTCTAACCTTAGAAATGATGTAGAAAACTGTGATTCTGAAACTTCAGTCAGCCAACCAACAGATGTCTCCCGACCTAATCAATACTCTACTGAAACTCTTGGGGTAGATGTTGGAGATAGTGTTTCCGAGCAAATTATGAGCTCCTCTCAGGGTAAAGATGAAGTACATGCCTCCTTGATGGGGAAAGAGAAAAGTAATATTGCTTTAATGGAGTGGCGAAGGATACAGAAGGTTATGCAGGATAGCATACCTCTTTGCACAGGCCATAATGAACCTTGTATTGCCCAGGTAGTGAAGAAGCAAGGTCCAAATTTCGGTCGCAGATTTTATGGACCTGCATCTAATTCTGATGCAAACTGTGGTTACTTTAAATGGGCAGCTTCCAAATCTCAGCAAAAATGA 1416 40.04 MVISLVLFNIYGPRAESNDTERIQFKFNFYQMLQKRWESLVNQGRRVTVVGDLNIAPTSMDRCDAGPDFENNEFRKWFRSLLVESGGQFLDVFRTKHPDRKDAYTCWSQSTGAEVFNYGSRIDHILCVGSCLHQDHNVQGHNFITCHVMECDILTQYKRWKHGDTYRWKGERTTKLEGSDHAPVYMTLGEIPDISQHNTPSLSARYIPMIHGVQQTLVSLLTKRQATDERISHELSSSLEHGNITIESCSQRVNRSSDNFSISGTPPGESCSISIQESEALILETEENLRNLPKETKYSASVTSGNEHIKPMLGDDRRKKVRKSQCVQISLKSFFQKSSNLRNDVENCDSETSVSQPTDVSRPNQYSTETLGVDVGDSVSEQIMSSSQGKDEVHASLMGKEKSNIALMEWRRIQKVMQDSIPLCTGHNEPCIAQVVKKQGPNFGRRFYGPASNSDANCGYFKWAASKSQQK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12768990 12772563 + Conep06aG0174800.1 Cone6ag1683 440567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1683 471 PANTHER AP ENDONUCLEASE 6 198 IPR004808 GO:0003906(PANTHER)|GO:0004518(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0006284(PANTHER)|GO:0008081(PANTHER)|GO:0008311(PANTHER)
Cone6ag1683 471 MobiDBLite consensus disorder prediction 298 317 - -
Cone6ag1683 471 ProSiteProfiles Zinc finger GRF-type profile. 424 467 IPR010666 GO:0008270(InterPro)
Cone6ag1683 471 Pfam GRF zinc finger 422 465 IPR010666 GO:0008270(InterPro)
Cone6ag1683 471 SUPERFAMILY DNase I-like 4 188 IPR036691 -
Cone6ag1683 471 MobiDBLite consensus disorder prediction 345 367 - -
Cone6ag1683 471 ProSiteProfiles AP endonucleases family 1 profile. 1 190 IPR004808 GO:0004518(InterPro)|GO:0006281(InterPro)
Cone6ag1683 471 Gene3D Endonuclease/exonuclease/phosphatase 3 189 IPR036691 -
Cone6ag1683 471 Pfam Endonuclease/Exonuclease/phosphatase family 22 129 IPR005135 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1683 K10772 - - csv:101222374 554.288
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1115 . . . Bda10g00185 . . . . . . . Cma07g00426 . Car07g00373 Sed10g0999 . . Bhi03g00865 Tan03g2085 Cmetu04g0755 . Hepe04g1593 . . . . . . . . . . . Cone6ag1683 . Lsi01g00600 . . . . Blo06g00300 . . . . . . . . Cmo07g00423 . . . . . . . . . . . . . . . . . . . . . . Chy02g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30