Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1686 ATGGCGGAAGTGCGATTGACCGGCGTGGTTCAGTGGTTCAGCGACTCCAAGGGCTTTGGCTTTATCAAGCCAGATGGAGATGGGGAAGATCTATTCGTCCATCAGTCATCGATCAAATCGGACGGCTACCGTAGACTCGTGGTCGGCGAGCACGTCGAGTTCCAGATTGCTGCTGGCGAGGATGGAAAATCCAAAGCCGTAGACGTCATTGGTCTGGATGGATCTACTGGGAAAGCTAACGGGAAAGATAGCTACGGTGGTGGAAGTGGTCGCAATGGTGGATGGAGGGGCGGTGATAGACGAAATGGCGGAGGTGGACCCGGTGCTGCTGGTTGCTACAATTGTGGTGATCAAGGTCATCTGGCTAGGGACTGCACTCACGGGAGTAACCGCGGCGCCGGAAGTGGAGGTGGCTGTTATAGTTGTGGCGAGGCTGGTCATATGGCCAGAGATTGTCCTCAAGGAAACAATGGTGCAGGCGGTTCTGGGAGTTGCTATAACTGTGGTGGGTTTGGGCACTTAGCCAGAGACTGTAATAAGGGAAGCGGTGGGAACGGAGGTGGTGGCGGTGGATGCTTCAAATGTGGGGAAGACGGGCACTTGGCAAGGGATTGTATGAAATCTGGCGGAGGTGCTGGTGGAAGAACGGGAAGGTTTGGTGGTGGAGGCAGAACTGGCGGTGGAGGTGGCTGCTTTAATTGTGGGGAGCCAAACCATTTTGCCAGAGAGTGTCCTAGTGCGGCTTAG 747 55.15 MAEVRLTGVVQWFSDSKGFGFIKPDGDGEDLFVHQSSIKSDGYRRLVVGEHVEFQIAAGEDGKSKAVDVIGLDGSTGKANGKDSYGGGSGRNGGWRGGDRRNGGGGPGAAGCYNCGDQGHLARDCTHGSNRGAGSGGGCYSCGEAGHMARDCPQGNNGAGGSGSCYNCGGFGHLARDCNKGSGGNGGGGGGCFKCGEDGHLARDCMKSGGGAGGRTGRFGGGGRTGGGGGCFNCGEPNHFARECPSAA 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12782102 12783239 + Conep06aG0175100.1 Cone6ag1686 440570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1686 248 SMART c2hcfinal6 138 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SMART c2hcfinal6 191 207 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SMART c2hcfinal6 111 127 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SMART c2hcfinal6 230 246 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SMART c2hcfinal6 164 180 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 ProSiteProfiles Zinc finger CCHC-type profile. 112 125 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 PANTHER COLD SHOCK DOMAIN PROTEIN 2 181 246 - -
Cone6ag1686 248 Gene3D - 1 69 IPR012340 -
Cone6ag1686 248 SMART csp_8 7 72 IPR011129 GO:0003676(InterPro)
Cone6ag1686 248 ProSiteProfiles Zinc finger CCHC-type profile. 192 205 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 MobiDBLite consensus disorder prediction 79 101 - -
Cone6ag1686 248 PRINTS Eggshell protein signature 155 170 - -
Cone6ag1686 248 PRINTS Eggshell protein signature 222 240 - -
Cone6ag1686 248 PRINTS Eggshell protein signature 180 190 - -
Cone6ag1686 248 PRINTS Eggshell protein signature 93 104 - -
Cone6ag1686 248 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 SUPERFAMILY Retrovirus zinc finger-like domains 102 156 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 Gene3D - 224 248 - -
Cone6ag1686 248 Gene3D - 161 186 - -
Cone6ag1686 248 Gene3D - 105 132 - -
Cone6ag1686 248 Gene3D - 133 160 - -
Cone6ag1686 248 Gene3D - 187 215 - -
Cone6ag1686 248 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 Pfam Zinc knuckle 230 246 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 Pfam Zinc knuckle 191 207 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 Pfam Zinc knuckle 111 127 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 Pfam Zinc knuckle 138 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Cone6ag1686 248 SUPERFAMILY Retrovirus zinc finger-like domains 157 208 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Cone6ag1686 248 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 SUPERFAMILY Retrovirus zinc finger-like domains 216 246 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone6ag1686 248 CDD CSP_CDS 7 69 IPR002059 GO:0003676(InterPro)
Cone6ag1686 248 ProSiteProfiles Zinc finger CCHC-type profile. 231 246 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1686 K09250 - - csv:101216334 281.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0714 Cone-Chr12:6597626 Cone6ag1686 Cone-Chr6:12782102 8.73E-47 dispersed
Cone6ag1686 Cone-Chr6:12782102 Cone8ag1275 Cone-Chr8:10525508 2.32E-22 dispersed
Cone6ag1686 Cone-Chr6:12782102 Cone8ag0853 Cone-Chr8:8472957 8.84E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46427 PF00676 E1_dh 6.70E-92 CL0254 Cone TF