Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1693 ATGGCGACTCCACTAGTGGACGAGGACTACCTCAAGGAAATTGAGAAAGCTCGTCGTGATCTTCGCTCTCTCATCTCCAGCAGGAGCTGCGCTCCAATCATGCTTCGTTTGGCCTGGCATGATGCTGGTACTTATGACACTAAAACAAAGTCAGGAGGTCCTAATGGCTCGATCAGGAACCAGAAAGAGTTAAATCATGTTGCAAATAAGGGACTGAAAATCGCAGTGGACTTTTGCGAAGAAGTAAAGGCCAGACATCCAAAAATCACATATGCTGATCTTTACCAGCTTGCTGGGATTGTTGCAGTTGAGGTCACAGGAGGCCCATCTATCAAGTTTGTTCCTGGGAGAAAGGATTCTAATGAATCTCCAGAAGAAGGGCGCCTTCCTGATGCCAAGAAAGGTGTGTCGCATTTAAAGGAGGTTTTCTATCGAATGGGCCTATCTGATAGGGACATAGTGGTGCTGTCAGGAGCTCACACACTTGGAAGGGCACATAAGGATCGATCGGATTTTGAGGGCCCTTGGACAAAGGACCCCATGAAGTTCGACAACTCCTATTTCGTGGAACTGTTGAAGGGAAACAGTGAGGGACTATTGAAACTTGCCACTGACAAGGCCTTATTGGAGGATCCTCTATTCCGAAGATATGTTGAGACATATGCCAAGGATGAAGATGCATTCTTTGAGGATTACGCTGTATCACATAGGAAACTTTCTGAGCTAGGCTTCACTCCGCCCCCTTCCTCCTCAGCTTGCAAGGTTACTAAGAGGACTACTACTACTACCAGCACATTGACATGGAGTATCGTGGCAGTTGCAATTGTTGTTGCGATCATGCTGAATTACTACTTCGAAGGTCATAGAATAAGTGTTAAGTGA 882 46.15 MATPLVDEDYLKEIEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDTKTKSGGPNGSIRNQKELNHVANKGLKIAVDFCEEVKARHPKITYADLYQLAGIVAVEVTGGPSIKFVPGRKDSNESPEEGRLPDAKKGVSHLKEVFYRMGLSDRDIVVLSGAHTLGRAHKDRSDFEGPWTKDPMKFDNSYFVELLKGNSEGLLKLATDKALLEDPLFRRYVETYAKDEDAFFEDYAVSHRKLSELGFTPPPSSSACKVTKRTTTTTSTLTWSIVAVAIVVAIMLNYYFEGHRISVK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12804155 12806151 - Conep06aG0175800.1 Cone6ag1693 440577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 220 244 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601(InterPro)
Cone6ag1693 293 Gene3D - 17 243 - -
Cone6ag1693 293 FunFam L-ascorbate peroxidase, cytosolic 130 236 - -
Cone6ag1693 293 Gene3D Peroxidase, domain 2 130 236 - -
Cone6ag1693 293 ProSiteProfiles Plant heme peroxidase family profile. 89 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 Pfam Peroxidase 18 224 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 SUPERFAMILY Heme-dependent peroxidases 10 256 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 CDD ascorbate_peroxidase 3 247 - -
Cone6ag1693 293 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 10 251 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Cone6ag1693 293 FunFam Cytosolic ascorbate peroxidase 17 137 - -
Cone6ag1693 293 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Cone6ag1693 293 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone6ag1693 293 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1693 K00434 - - sly:101264261 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1289 Cone-Chr17:9235089 Cone6ag1693 Cone-Chr6:12804155 5.14E-62 dispersed
Cone19ag1282 Cone-Chr19:8713959 Cone6ag1693 Cone-Chr6:12804155 2.11E-84 dispersed
Cone20ag0439 Cone-Chr20:2210392 Cone6ag1693 Cone-Chr6:12804155 4.91E-72 dispersed
Cone6ag1693 Cone-Chr6:12804155 Cone7ag1522 Cone-Chr7:10566661 1.51E-75 dispersed
Cone17ag1019 Cone-Chr17:7773942 Cone6ag1693 Cone-Chr6:12804155 4.69E-40 transposed
Cone6ag1693 Cone-Chr6:12804155 Cone9ag1617 Cone-Chr9:11540097 3.25E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1146 . . . . . . . . . . Cma03g00672 . Car03g00618 . . . . . . . . . . . . . . . . . . . . Cone6ag1693 Cone9ag1617 Lsi01g00584 . . . . Blo06g00285 . . . . . . . Cmo03g00697 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00555 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63