Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1700 ATGCCGATTTTTTTGAAAGGCAACAATGGCTTGCTGTCTCGCCTCAAATCCTTCCTTAAGCTTCAGAGACTGAACCACACCTTCACTGAAAAAGGACTACAAACTCAAATATGTGATTCCAGTTCAGATGCTCGCCAAGAAATAACCCACATTGACATGTCCATATGGAAAAAGATAAACGCGAGGTATATTGGGATAAATTCTTCCATGATTCCGGCTGCATCATGGACTGTCTTGCAAGTTCTTCGAAATGAAGGGTTTGAAGCCTACTTTGTCGGTGGCTGTGTGAGAGACTTAATCCTGAATAAAATACCTAAAGACTTTGACGTGATCACCACTGCCGGACTGAAACAGATCAAGAAGCAATTTCATCGTGCACAAATTGTTGGCCAACGGTACCCTATTTGTATGGTGCATCTAAGAGGCTCCACGATAGAGGTATCAAGTTTTGAGACAACCCCAAAAAATGAGAAACAAATGGATCCAATTTCTCATATACCAAAAGGGTGTGATAAAACAGACATCATGCGTTGGGAAAACTCCATGCATCGAGACTTCACCATCAATAGCTTATTCTTTGATCCTTTTGTTAACACAATCTATGACTACGTCAATGGAATAGGGGACTTGAGGTCCATGAAGCTAAGGACACTAGTCCCTGCTCAGACGTCATTCAGGGCAGATTGTGCAAGAATCCTACGGGGCATAAGAGTTGCAGCTCGATTGGGTTTGTCGTTCTCAAAGGACACTGAGACTGCGATTCATAGTCTTTCTTCTTCCGTCATGGGTTTGGCCAAGGGCAGGTTAATGATGGAGATGAACTACATGTTGTCTTATGGAGCTGCTGAACCTTCTTTGAATTTGCTTCGGAGATTCAAATTGCTTGAAATTTTACTCCCGTTTCACGCAGCATGCCTTGATAAACAGACTGCTAAGAAATCTCCTCAGATATTGATGAGATTGTTCTTCAATCTGGATAAAGTGGTTTCTTGTGAAAGACCTTCCGACTGCAATATATGGGTTGGATTGTTGGCATTTCACCAGGCATTAGTAAATAATCCCCAAGATGCTCTTGTAATCCTGGCTTTTGCTTCTGTCCTGTACCATGGGGAGTGGAGGGAAGGTGTAAGATTTGCCCGAGAACATGCTCAAGTGCATGTTAATTTTGTGCCAGAGATTAGAAGATGCTCTGAATTTAAATCAGATGAAGAACTTGCAGACGGAGTTGCTTACTTTGCTTCTTTGGTGCAAGATTCTATTGCCGCACTCACTGAGATAGATCATCCTTCAGAACCCTCACGTCCGGTGTTTATATTGAACAAAACTGCAAAGAATGTTGCTGAGGTTTTTGAAGTTTTGGTGAATGATATAGAATCATACCAGAAGGGACGAACAAGTTTTGAGATCGACTATCAACTACTTGGGAAGGGAAGGGTGGGAGAGACGAGATTTGTTCTGGGTGAAGTCATCTTGGAAACTATGAGCAGTGGGATTGTTCATGGAAAAGGAAAGGCCCTTGAAGAGCAGAAAAAGCATAATTATCCAAAGAATCGTAAGTCAAGTTGCCATGTGCCCCTTTCTGATACGATGAAGCAGCACCTGGTGGTTGAGAAGAATAGAAAACATTGCCTGGAGCAAGAAATGGCAAAGAAAGAGCTGATTCAGAAATTATGCAATGTTTGTGACCAGGAGATGGCTGAGAAAGGGGACTATGTGCAGATTCATAAGAAGGAAAGCATAGGGAAGACGTTCCAATTGAATGAGGGAGAAACTGACATGGTTCATGATGCCATGATTGAGAAGAAGCAAGGAGCTCTAAAAAAGGGGAAGCAAGAAGCACTTCAAAATGAGAAGAGCCAGAGTAGGTGTAAAAAGAATTTGAAGGTTTTAGAGGACAAGTTGCAAGCATCGCCGAGTAAGAATAGAAAGAGGAAGCCAGGGGGAGTGAAGAATGACATAAGGCAGGAGGAGATGAACGGGCAGAAAAATAAATTGGAGAAGCAAAAAAACAGTTCAAATCGAGAGCATACGAATGTAGTCAGCAGATCACTATCGAGCCTGTTTAAATGA 2070 42.22 MPIFLKGNNGLLSRLKSFLKLQRLNHTFTEKGLQTQICDSSSDARQEITHIDMSIWKKINARYIGINSSMIPAASWTVLQVLRNEGFEAYFVGGCVRDLILNKIPKDFDVITTAGLKQIKKQFHRAQIVGQRYPICMVHLRGSTIEVSSFETTPKNEKQMDPISHIPKGCDKTDIMRWENSMHRDFTINSLFFDPFVNTIYDYVNGIGDLRSMKLRTLVPAQTSFRADCARILRGIRVAARLGLSFSKDTETAIHSLSSSVMGLAKGRLMMEMNYMLSYGAAEPSLNLLRRFKLLEILLPFHAACLDKQTAKKSPQILMRLFFNLDKVVSCERPSDCNIWVGLLAFHQALVNNPQDALVILAFASVLYHGEWREGVRFAREHAQVHVNFVPEIRRCSEFKSDEELADGVAYFASLVQDSIAALTEIDHPSEPSRPVFILNKTAKNVAEVFEVLVNDIESYQKGRTSFEIDYQLLGKGRVGETRFVLGEVILETMSSGIVHGKGKALEEQKKHNYPKNRKSSCHVPLSDTMKQHLVVEKNRKHCLEQEMAKKELIQKLCNVCDQEMAEKGDYVQIHKKESIGKTFQLNEGETDMVHDAMIEKKQGALKKGKQEALQNEKSQSRCKKNLKVLEDKLQASPSKNRKRKPGGVKNDIRQEEMNGQKNKLEKQKNSSNREHTNVVSRSLSSLFK 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12838920 12843714 + Conep06aG0176500.1 Cone6ag1700 440584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1700 689 Coils Coil 655 675 - -
Cone6ag1700 689 CDD NT_ClassII-CCAase 83 211 IPR002646 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0016779(InterPro)
Cone6ag1700 689 SUPERFAMILY Nucleotidyltransferase 70 211 IPR043519 -
Cone6ag1700 689 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 5 512 IPR052191 -
Cone6ag1700 689 MobiDBLite consensus disorder prediction 634 689 - -
Cone6ag1700 689 MobiDBLite consensus disorder prediction 634 673 - -
Cone6ag1700 689 MobiDBLite consensus disorder prediction 674 689 - -
Cone6ag1700 689 Pfam Probable RNA and SrmB- binding site of polymerase A 243 304 IPR032828 -
Cone6ag1700 689 Pfam Poly A polymerase head domain 89 216 IPR002646 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0016779(InterPro)
Cone6ag1700 689 SUPERFAMILY Poly A polymerase C-terminal region-like 215 368 - -
Cone6ag1700 689 Gene3D - 217 420 - -
Cone6ag1700 689 Gene3D Beta Polymerase, domain 2 71 216 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1700 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0235 Cone-Chr19:1543383 Cone6ag1700 Cone-Chr6:12838920 8.83E-92 transposed
Cone6ag1700 Cone-Chr6:12838920 Cone9ag1623 Cone-Chr9:11574358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1182 . Blo16g00104 . . . Bpe13g00392 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1700 Cone9ag1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01062 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 32