Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1701 ATGGGTAGCAGAAAATTTGGCCAAAACAGGAGAGCTTTGAGTAGCATTAATCACAATTTAGTGCAAGCTCAAGCATACCCTTGTGTCGTTAACAAAAGAGCCTTGTCTGGAACACACGAATTATGCGAAAAGAAGCAGGCTGACCCATTGCATAGACCAATCACCAGGAAGTTCGCTGCAGAAATTGCAAGCAGTCAACAATATTGTTCACAGGAAACTATAAATGCTCCCTCAGTTCCACACTCATCGGATGGATTTGGAGATTTCATATTTGTAGATGAGAAATTCAAATCACCCAAAGACCATCCCATGTCTATGTCTACAGATGAAGCGGAAATAGTTCCTGAGGAAACTAGTCAGACAGAGGTTGAAATGGAGGATATTGTAGAAGAAGAAGAGCCCATTACAGATATAGATAGTTGTGATTTTAAGAACCCGCTTGCTGCTGTCGACTATGTTGATGATCTATACGCGCACTACAAGAAATTTGAGAGTCATAGCTGTGTGTCACCGAACTATATGGAGCAACAATGTGACATTAACGCGAAGATGAGGGGTATATTGATCGACTGGCTTATTGAGGTGCATGATAAATTTGGGCTGATGAAGGAAACACTATTCCTTACGGTTAATCTGATAGACAGATTCTTAGCGCAGCAAAACATAGTGAGAAAGAAGCTTCAATTGGTCGGTTTGGTTGCCATGCTCTTAGCTTGCAAGTACGAGGAAGTATCTGTTCCTATTGTGGGAGATTTGATTATGATATCGGACAAATCTTACTCAAGGAAAGAAATACTAGAAATGGAGACATTGATTCTGAACACCCTCCAATTCAACATGTCAGTCCCAACCCCATATGTGTTCATGCGCAGGTTCCTCAAGGCTGCTCAATCCGAGAAGAAGCTGGAGCAACTATCCTTCTTCTTGATTGAACTATGCTTAGTGGAGTGCGAGATGCTGAAGTATGCGCCATCTTTGTTAGCGGCTGCAGCCATTTACACAGCACAATGTAGCCTGTACGGGTCAAGGCAGTGGAGCAGGACATGTGAGTGGCATTCAAGCTACTCAGAAGAGAAGCTGATGGAATGCTCGAGAATGATGGTGGGGCTACACCAACAAGCAGCGACAGGGAAACTGACTGGAGTGCATAGGAAATATAGTACATCTAAGTTTGAGTATACCGCTAAATGTGAAGCTGCACATTTTCTTCTGGATGTCCATTTGAAGTAG 1230 42.85 MGSRKFGQNRRALSSINHNLVQAQAYPCVVNKRALSGTHELCEKKQADPLHRPITRKFAAEIASSQQYCSQETINAPSVPHSSDGFGDFIFVDEKFKSPKDHPMSMSTDEAEIVPEETSQTEVEMEDIVEEEEPITDIDSCDFKNPLAAVDYVDDLYAHYKKFESHSCVSPNYMEQQCDINAKMRGILIDWLIEVHDKFGLMKETLFLTVNLIDRFLAQQNIVRKKLQLVGLVAMLLACKYEEVSVPIVGDLIMISDKSYSRKEILEMETLILNTLQFNMSVPTPYVFMRRFLKAAQSEKKLEQLSFFLIELCLVECEMLKYAPSLLAAAAIYTAQCSLYGSRQWSRTCEWHSSYSEEKLMECSRMMVGLHQQAATGKLTGVHRKYSTSKFEYTAKCEAAHFLLDVHLK 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12844184 12846344 + Conep06aG0176600.1 Cone6ag1701 440585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1701 409 SMART cyclin_7 287 369 IPR013763 -
Cone6ag1701 409 SMART cyclin_7 190 274 IPR013763 -
Cone6ag1701 409 Pfam Cyclin, N-terminal domain 155 281 IPR006671 -
Cone6ag1701 409 ProSitePatterns Cyclins signature. 185 216 IPR048258 -
Cone6ag1701 409 SUPERFAMILY Cyclin-like 144 280 IPR036915 -
Cone6ag1701 409 SMART Cyclin_C_2 283 400 IPR004367 -
Cone6ag1701 409 CDD CYCLIN_AtCycB-like_rpt2 283 398 - -
Cone6ag1701 409 MobiDBLite consensus disorder prediction 100 120 - -
Cone6ag1701 409 CDD CYCLIN_AtCycB-like_rpt1 134 278 - -
Cone6ag1701 409 Gene3D - 155 395 - -
Cone6ag1701 409 FunFam G2/mitotic-specific cyclin 169 276 - -
Cone6ag1701 409 Pfam Cyclin, C-terminal domain 283 398 IPR004367 -
Cone6ag1701 409 PIRSF Cyclin_A_B_D_E 1 409 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone6ag1701 409 PANTHER CYCLINS 131 387 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone6ag1701 409 FunFam G2/mitotic-specific cyclin-1 277 395 - -
Cone6ag1701 409 Gene3D - 169 281 - -
Cone6ag1701 409 SUPERFAMILY Cyclin-like 282 399 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0860 Cone-Chr12:7712167 Cone6ag1701 Cone-Chr6:12844184 4.47E-15 dispersed
Cone17ag1451 Cone-Chr17:9849759 Cone6ag1701 Cone-Chr6:12844184 1.94E-146 dispersed
Cone20ag0025 Cone-Chr20:155965 Cone6ag1701 Cone-Chr6:12844184 3.90E-126 dispersed
Cone4ag2018 Cone-Chr4:14050059 Cone6ag1701 Cone-Chr6:12844184 4.73E-144 dispersed
Cone6ag0348 Cone-Chr6:1692728 Cone6ag1701 Cone-Chr6:12844184 4.89E-19 dispersed
Cone6ag1701 Cone-Chr6:12844184 Cone7ag1934 Cone-Chr7:12340108 1.72E-158 dispersed
Cone12ag0859 Cone-Chr12:7710310 Cone6ag1701 Cone-Chr6:12844184 3.11E-146 wgd
Cone6ag1701 Cone-Chr6:12844184 Cone8ag0889 Cone-Chr8:8686330 2.70E-171 wgd
Cone6ag1701 Cone-Chr6:12844184 Cone9ag1624 Cone-Chr9:11579755 1.23E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1701 K21777 - rcu:8268759 553.132