Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1711 ATGTTCGCTGGGTACTGCGTTTATGTATTCACTGCGGGAGTTAATTTGCGGCCTTATGCTGTTCCATATAAGTTGATTCCATTTGGGGATGGCCAGAATAACCCAAGTTGTACTGAGCTTGTTAGTCTAATCACAGCAGGGGTCTATAATGCAGCCATAGGTGATATTGCAATCATCACCAATCGAACGAGAATGGTTGATTTTACTCAACCCTACATCGAATCTGGCCTAGTAGTTGTCGCTCCGGTTATGAAGTCGAACTCTAGTGCTATGGCTTTTCTACAGCCATTCACTCTCAGGATGTGGCTTGTCCCAGCTCTCTTTTTCCTCGTTGTGGGTGCCGTTGTTTGGATTTTGGAGCACAGGCTTAAAGTGGCTGAAAATTCATTCTCGTTTTGCTTTCAACTGCGATCTGCATGCGGACTGTTTATGTCTGGATTCAATATAACTTCTATATTCTTCTTTCATGCTGCAGGAGAAAATAGAGTCAGCACCCTTGGTCGCCTAGTGCTGATTATATGGTTATTTGTGGTTCTTATAGTCAACTCAAGCTATACTGCAAGCTTGACCTCAATCCTTACAGTGCGGCAGCTTTCTTCTCCCATTAGGGGCATTGAAACTTTGGTTTCGAGCAGCGATCCAGTCGGTTATCGGCAGGGTTCATTTGCTCGAAATTACCTAATTGAGGAACTGGGCATCCATGAGTCCCGGCTTGTTCCTCTCAAATCGCCAGAAGATTATGCTAAGGCCTTGAAAGATGGTCCACGGAAGGGGCGTGTTGCTGCAGTTGTTGACGAGCGTGCATATATAGAGCTCTTTCTTTCCACCCGATTTGAATTCAGTATCGTTGGTCAAGAGTTCACTCCAAATGGGTGGGTTGACATGTCAACTGCCGTTTTGAAACTATCTGAGAATGGGGACCTCAAAAGGATCCTGACAAATGGCTTACGAGAAGTGCTTGCATTTCACAAAGCTCCAAGTTTCAGTCCGTATGATATCGAGTCTAGTGCTGGCTCTGGTCAAATCAGCTCTCAGTCCGGACATCTTCAAACATTTCTTTTGTTCGAGGACGAGAAAGAAGATGTTGTCAAAAGACGATAA 1101 44.78 MFAGYCVYVFTAGVNLRPYAVPYKLIPFGDGQNNPSCTELVSLITAGVYNAAIGDIAIITNRTRMVDFTQPYIESGLVVVAPVMKSNSSAMAFLQPFTLRMWLVPALFFLVVGAVVWILEHRLKVAENSFSFCFQLRSACGLFMSGFNITSIFFFHAAGENRVSTLGRLVLIIWLFVVLIVNSSYTASLTSILTVRQLSSPIRGIETLVSSSDPVGYRQGSFARNYLIEELGIHESRLVPLKSPEDYAKALKDGPRKGRVAAVVDERAYIELFLSTRFEFSIVGQEFTPNGWVDMSTAVLKLSENGDLKRILTNGLREVLAFHKAPSFSPYDIESSAGSGQISSQSGHLQTFLLFEDEKEDVVKRR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12917543 12919036 + Conep06aG0177600.1 Cone6ag1711 440595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1711 366 Gene3D - 216 289 - -
Cone6ag1711 366 FunFam Glutamate receptor 90 236 - -
Cone6ag1711 366 SMART GluR_14 1 318 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone6ag1711 366 Pfam Ligand-gated ion channel 99 242 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone6ag1711 366 SUPERFAMILY Periplasmic binding protein-like II 2 312 - -
Cone6ag1711 366 Gene3D - 85 215 - -
Cone6ag1711 366 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 314 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone6ag1711 366 FunFam Glutamate receptor 1 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1711 Cone-Chr6:12917543 Cone7ag1638 Cone-Chr7:11071332 1.90E-54 dispersed
Cone6ag1711 Cone-Chr6:12917543 Cone8ag0908 Cone-Chr8:8803388 1.58E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1711 K05387 - vvi:100262768 432.565