Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0002 ATGTATGAAAATAGTAGTGGAATCAAGTTAAGTGGAATCCAGCAGATTGTGAGGCTGAAGGAGTTGCTGCAAAAGTGGAAGGCGACGGCCCTCAGCCCAAAGGGAACAGCTAGTGATGATGGTGCTAGCCGTGGGGGAATAAATAACATGACCAGCACACCACCCTCGCCAATCTTGATGAATAGAAGGCTATCCCATGTTCTTATGAGCAGTAATACTGGTTGCGACTCAGATGACGAGAGCTCATGTCAGAGCCCAGAACCCCCATCGGATGTGCCCCCAGGCTATCTGGCCGTCTACGTTGGGCCGGAGCTGCAGAGGTTTATCATCCCCACCACATATCTCAGCCACTCTCTCTTCAAGGTCTTGCTCCAGAAGGCGGAGGAAGAGTTTGCCTTTCACTATCACGGCGGGGCCCTCACAATCCCCTGCGACATCCACACCTTCCAGTACCTTCTCAAGTGCATGGACGACAACCAATTCCCTTGTCATGATGATGATCATGACACCTCCGCTCCGCTGGAGATCCAATAA 534 51.69 MYENSSGIKLSGIQQIVRLKELLQKWKATALSPKGTASDDGASRGGINNMTSTPPSPILMNRRLSHVLMSSNTGCDSDDESSCQSPEPPSDVPPGYLAVYVGPELQRFIIPTTYLSHSLFKVLLQKAEEEFAFHYHGGALTIPCDIHTFQYLLKCMDDNQFPCHDDDHDTSAPLEIQ 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20878 21576 - Conep07aG0000200.1 Cone7ag0002 440598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0002 177 Pfam Auxin responsive protein 72 155 IPR003676 GO:0009733(InterPro)
Cone7ag0002 177 MobiDBLite consensus disorder prediction 42 57 - -
Cone7ag0002 177 MobiDBLite consensus disorder prediction 71 86 - -
Cone7ag0002 177 MobiDBLite consensus disorder prediction 33 57 - -
Cone7ag0002 177 MobiDBLite consensus disorder prediction 71 91 - -
Cone7ag0002 177 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 156 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1399 Cone-Chr20:8924205 Cone7ag0002 Cone-Chr7:20878 1.66E-16 dispersed
Cone3ag0177 Cone-Chr3:948251 Cone7ag0002 Cone-Chr7:20878 3.32E-15 dispersed
Cone4ag1868 Cone-Chr4:13387584 Cone7ag0002 Cone-Chr7:20878 5.32E-19 dispersed
Cone7ag0002 Cone-Chr7:20878 Cone7ag1781 Cone-Chr7:11707117 5.68E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0002 K14488 - cit:102619589 178.333