Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag0007 | ATGAAAGCTCCCCCAAATGGGTCTTCTGCCAACTCTGGAGAAGGCGAACGCACGAATATCAACTCAGAGTTATGGCATGCTTGTGCCGGGCCCCTGGTTTCTTTGCCTCCAGTTGGGAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGCGAGCAAGTCGCAGCATCGATGCAGAAGGAGAACGATTTCATACCCAATTACCCTAACCTTCCTTCCAAGCTGATTTGCGTGCTTCATAATGTCACATTACATGCTGATCTGGAAACTGATGAAGTCTACGCTCAAATGACCCTTCAACCTGTAACCAAATATGACAAGCAAGCATTACTGTTATCCGACCTGGGCCTCAAGCAAAGCAGGCAACCTGCTGAATTCTTCTGCAAAACTCTCACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGGGCAGCTGAGAAGATCTTCCCACCACTAGATTACTCAATGCAACCCCCTGCTCAGGAGCTAGTAGCCAGAGACTTGCACGATAATAGCTGGACTTTCAGGCATATTTATCGTGGGCAACCAAAAAGGCACCTTCTGACTACTGGTTGGAGTGTCTTTGTCAGCTCAAAAAGACTCTTCGCTGGTGACTCTGTCCTTTTTATAAGAGATGAAAAATCGCAGCTTCTCTTAGGTTTGAGGCATGCTAATCGACAACACCCAACTCTTTCTTCATCTGTCATATCTAGTGATAGCATGCACATTGGAGTTCTTGCATCTGCAGCTCATGCTGCTGCAAATTACAGCCCGTTCACTATCTTCTACAACCCTAGGGCTAGTCCATGTGAATTTGTGATTCCCTTGGCCAAGTATAATAAGGCAATGGATACCCAAATCTCCCTTGGCATGCGCTTTAGAATGATGTTTGAGACAGAGGAATCAGGAGTACGCAGATACATGGGTACTATCACTGGTATCAGTGACTTGGATTCCATGCACTGGAAAAATTCACAGTGGCGCAAACTTCAGGTTGGATGGGATGAGTCGGCAGCTGGTGAACGGCCCAGCCGGGTTTCAATGTGGGAAATAGAGCCAGTCGTAACTCCGTTCTACATATGTCCACCTCCATTTTTCAGACCCAAGCTCCCCAAACAGCCGGGGATGCCAGATAATGACTCTGACATTGAGAATGCTTTTAAGAGAGCCATGCCGTGGCTTGGAGACGACTTTGGCATAACAGATACCCAAAGCTCGATATTTCCTGGCTTGAGCTTGGTGCAGTGGATGAACTTGCAACACAATAATCAGTTTCCAGCTGCTACTCAATCTGGATTCTTACAGTCCATTTCAAATGCCCATGCCCATCAGAATAATCTTATTTCTGGTGATCCATCAAAACTACTGAGTTTTCAAGCGCCAGCACCTCCTCTACCAGGTAGTCTCCAGTTTAACAAAACAAATCACCAAAGCCAAGCAGGGAAATTGCAACAGACAGAGCAACAGCAGGAAATACAACAGGTGCCTCAGCAACATCAAGCGCAGTCACAGCAGCAGGCGACACAACAACAGGCCTGTCGACCATCATCCGTTAAAACCGGTTATAGCATTTCTGGTCCTCACCAGATTTCAACTAACCAGACTCAGCAGGAATCGGTTATATACCCTGAGCGTCAGCAGCATCAGTTGCTGAAAGGCAACACCCAATCGCAGCGATTTAGTCACTCTTCTGCTAACAGGAATCCATCAGTCCCACAAGAATCACAAATGGAACACAAACCTAGCCTCATTCCAAACGGAAGAAACCAACAACAAACACAGTTGCAACAACAGCCCCCGCTACAGCTGTTGCAACAACAGGCCCCGCTACAGCTGTTGCAACAACAGCCCCCGCTACAGCTGTTGCAACAAACCCTGTCACAGAGATTGCAGCCACACCAGATGCTTCCGGACCAGCACCCTCAAGAGTTCGTCCCCCAGGCGAGCTTACAATTTCCACCTCAACTGCAACCCCAACATCAACAGATATTGGAGATGCATCACCAACATCAGATATTGTCACATTTGCCTCTGTCCCACCAGCAGCAGCCAAACACCCACCTATATTCTTCAACTGAGAAGCTTCTCAACACCAACAGCTACTCGACCACAAGCCTCATGCAATCCCAGCAGGCTCCTTTGAGCCAATCTCAGGGGCAGTTTAGACCACTCACTACACTCAGACCTCCTGATGGGGATGCTCTCTCATGTTCAACCCCACCCTCCACTAACAGTTGCCAGCTTTCATCTTCAAACCTTCTCGACAGAAACCAAGTTACGCTGGTGGGAGAGTCATCGGTTGAGCCCACCAATACCATGATGGCAGATCTCCAGAGTAAATCAGGGACCCAAATGAAACACGAGTTGCCCCCTGCAATACGACCGGACCAGCTGAAATACAAAGGTGCACTCGCCGATCAGATGGAAGCATCCTCAGGAACAGCATACTGTATGGATCCTGTCACCATTCGCCACATTTCCCCACTCCCCACCTTCTGTTTGGACAGTGATACTCATCCTCATTCTCGGAGCAATCTTCCTTTGACATCAAATATTGATGGGCTAGTGCCAGACACCCTACTCTCTGCTGGATATGACTCTCAGAAAGATCTACAAAACTTACTTTCTGACTACATGGGGATTCCCCCCAGAGAGATTGAGACAGAGTTGTCCACTGCTCTAGTGAATCCTCAGATGCAAGACATGCCTCCTTCCAAGCCTGGCTGCTCCACCGATGTAACCATTAATGAAGCAAGGGCATTGAGTTCTGGACTATGGGCAAACCAGACTCCACGTATGCGAACTTATACAAAGGTTCAAAAGCGTGGATCTGTGGGAAGATGTATTGATGTGACCCGTTACAAAGGATATGATGAGTTGAGGCATGATCTGGCCCGCATGTTTGGGATCGAAGGCCAGCTAGAAGATGTCCAAAGGACCGACTGGAAACTTGTGTATGTGGATCATGAAAATGACATACTTCTTGTTGGTGATGATCCTTGGGAAGAGTTTGTGAGTTGTGTTCAGAGCATAAAGATACTTTCAGCGGGTGAGGTACAGCGGATGAGTTTGGATGGAGATTTTGGTCAGATTCCGAACCCCATTCAAGCTTGTAGCGGAACAGACAGTGAAAATGCATGGAGGGGACAGTGTGATGACAACTCTGCCACGTCCTTCAACCGATAA | 3195 | 47.86 | MKAPPNGSSANSGEGERTNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICVLHNVTLHADLETDEVYAQMTLQPVTKYDKQALLLSDLGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFIRDEKSQLLLGLRHANRQHPTLSSSVISSDSMHIGVLASAAHAAANYSPFTIFYNPRASPCEFVIPLAKYNKAMDTQISLGMRFRMMFETEESGVRRYMGTITGISDLDSMHWKNSQWRKLQVGWDESAAGERPSRVSMWEIEPVVTPFYICPPPFFRPKLPKQPGMPDNDSDIENAFKRAMPWLGDDFGITDTQSSIFPGLSLVQWMNLQHNNQFPAATQSGFLQSISNAHAHQNNLISGDPSKLLSFQAPAPPLPGSLQFNKTNHQSQAGKLQQTEQQQEIQQVPQQHQAQSQQQATQQQACRPSSVKTGYSISGPHQISTNQTQQESVIYPERQQHQLLKGNTQSQRFSHSSANRNPSVPQESQMEHKPSLIPNGRNQQQTQLQQQPPLQLLQQQAPLQLLQQQPPLQLLQQTLSQRLQPHQMLPDQHPQEFVPQASLQFPPQLQPQHQQILEMHHQHQILSHLPLSHQQQPNTHLYSSTEKLLNTNSYSTTSLMQSQQAPLSQSQGQFRPLTTLRPPDGDALSCSTPPSTNSCQLSSSNLLDRNQVTLVGESSVEPTNTMMADLQSKSGTQMKHELPPAIRPDQLKYKGALADQMEASSGTAYCMDPVTIRHISPLPTFCLDSDTHPHSRSNLPLTSNIDGLVPDTLLSAGYDSQKDLQNLLSDYMGIPPREIETELSTALVNPQMQDMPPSKPGCSTDVTINEARALSSGLWANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDVQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSAGEVQRMSLDGDFGQIPNPIQACSGTDSENAWRGQCDDNSATSFNR | 1064 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 41810 | 48731 | + | Conep07aG0000700.1 | Cone7ag0007 | 440603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag0007 | 1064 | SMART | B3_2 | 126 | 228 | IPR003340 | GO:0003677(InterPro) | |
Cone7ag0007 | 1064 | ProSiteProfiles | PB1 domain profile. | 937 | 1030 | IPR053793 | - | |
Cone7ag0007 | 1064 | Gene3D | - | 933 | 1026 | - | - | |
Cone7ag0007 | 1064 | SUPERFAMILY | DNA-binding pseudobarrel domain | 115 | 255 | IPR015300 | - | |
Cone7ag0007 | 1064 | MobiDBLite | consensus disorder prediction | 457 | 540 | - | - | |
Cone7ag0007 | 1064 | CDD | B3_DNA | 125 | 218 | IPR003340 | GO:0003677(InterPro) | |
Cone7ag0007 | 1064 | Gene3D | - | 124 | 227 | IPR015300 | - | |
Cone7ag0007 | 1064 | Pfam | B3 DNA binding domain | 126 | 225 | IPR003340 | GO:0003677(InterPro) | |
Cone7ag0007 | 1064 | MobiDBLite | consensus disorder prediction | 553 | 600 | - | - | |
Cone7ag0007 | 1064 | FunFam | Auxin response factor | 124 | 228 | - | - | |
Cone7ag0007 | 1064 | FunFam | Auxin response factor | 932 | 1026 | - | - | |
Cone7ag0007 | 1064 | SUPERFAMILY | CAD & PB1 domains | 950 | 1016 | - | - | |
Cone7ag0007 | 1064 | Gene3D | - | 289 | 360 | - | - | |
Cone7ag0007 | 1064 | Pfam | Auxin response factor | 252 | 334 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone7ag0007 | 1064 | ProSiteProfiles | B3 DNA-binding domain profile. | 126 | 228 | IPR003340 | GO:0003677(InterPro) | |
Cone7ag0007 | 1064 | MobiDBLite | consensus disorder prediction | 1043 | 1064 | - | - | |
Cone7ag0007 | 1064 | FunFam | Auxin response factor | 289 | 361 | - | - | |
Cone7ag0007 | 1064 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 1028 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone7ag0007 | 1064 | MobiDBLite | consensus disorder prediction | 471 | 540 | - | - | |
Cone7ag0007 | 1064 | Pfam | AUX/IAA family | 935 | 1022 | IPR033389 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone6ag0985 | Cone-Chr6:5395159 | Cone7ag0007 | Cone-Chr7:41810 | 4.75E-103 | dispersed | |
Cone7ag0007 | Cone-Chr7:41810 | Cone7ag0776 | Cone-Chr7:4949876 | 0 | dispersed | |
Cone4ag0837 | Cone-Chr4:5421395 | Cone7ag0007 | Cone-Chr7:41810 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46428 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag0007 | - | - | - | 0.0 |