Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0007 ATGAAAGCTCCCCCAAATGGGTCTTCTGCCAACTCTGGAGAAGGCGAACGCACGAATATCAACTCAGAGTTATGGCATGCTTGTGCCGGGCCCCTGGTTTCTTTGCCTCCAGTTGGGAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGCGAGCAAGTCGCAGCATCGATGCAGAAGGAGAACGATTTCATACCCAATTACCCTAACCTTCCTTCCAAGCTGATTTGCGTGCTTCATAATGTCACATTACATGCTGATCTGGAAACTGATGAAGTCTACGCTCAAATGACCCTTCAACCTGTAACCAAATATGACAAGCAAGCATTACTGTTATCCGACCTGGGCCTCAAGCAAAGCAGGCAACCTGCTGAATTCTTCTGCAAAACTCTCACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGGGCAGCTGAGAAGATCTTCCCACCACTAGATTACTCAATGCAACCCCCTGCTCAGGAGCTAGTAGCCAGAGACTTGCACGATAATAGCTGGACTTTCAGGCATATTTATCGTGGGCAACCAAAAAGGCACCTTCTGACTACTGGTTGGAGTGTCTTTGTCAGCTCAAAAAGACTCTTCGCTGGTGACTCTGTCCTTTTTATAAGAGATGAAAAATCGCAGCTTCTCTTAGGTTTGAGGCATGCTAATCGACAACACCCAACTCTTTCTTCATCTGTCATATCTAGTGATAGCATGCACATTGGAGTTCTTGCATCTGCAGCTCATGCTGCTGCAAATTACAGCCCGTTCACTATCTTCTACAACCCTAGGGCTAGTCCATGTGAATTTGTGATTCCCTTGGCCAAGTATAATAAGGCAATGGATACCCAAATCTCCCTTGGCATGCGCTTTAGAATGATGTTTGAGACAGAGGAATCAGGAGTACGCAGATACATGGGTACTATCACTGGTATCAGTGACTTGGATTCCATGCACTGGAAAAATTCACAGTGGCGCAAACTTCAGGTTGGATGGGATGAGTCGGCAGCTGGTGAACGGCCCAGCCGGGTTTCAATGTGGGAAATAGAGCCAGTCGTAACTCCGTTCTACATATGTCCACCTCCATTTTTCAGACCCAAGCTCCCCAAACAGCCGGGGATGCCAGATAATGACTCTGACATTGAGAATGCTTTTAAGAGAGCCATGCCGTGGCTTGGAGACGACTTTGGCATAACAGATACCCAAAGCTCGATATTTCCTGGCTTGAGCTTGGTGCAGTGGATGAACTTGCAACACAATAATCAGTTTCCAGCTGCTACTCAATCTGGATTCTTACAGTCCATTTCAAATGCCCATGCCCATCAGAATAATCTTATTTCTGGTGATCCATCAAAACTACTGAGTTTTCAAGCGCCAGCACCTCCTCTACCAGGTAGTCTCCAGTTTAACAAAACAAATCACCAAAGCCAAGCAGGGAAATTGCAACAGACAGAGCAACAGCAGGAAATACAACAGGTGCCTCAGCAACATCAAGCGCAGTCACAGCAGCAGGCGACACAACAACAGGCCTGTCGACCATCATCCGTTAAAACCGGTTATAGCATTTCTGGTCCTCACCAGATTTCAACTAACCAGACTCAGCAGGAATCGGTTATATACCCTGAGCGTCAGCAGCATCAGTTGCTGAAAGGCAACACCCAATCGCAGCGATTTAGTCACTCTTCTGCTAACAGGAATCCATCAGTCCCACAAGAATCACAAATGGAACACAAACCTAGCCTCATTCCAAACGGAAGAAACCAACAACAAACACAGTTGCAACAACAGCCCCCGCTACAGCTGTTGCAACAACAGGCCCCGCTACAGCTGTTGCAACAACAGCCCCCGCTACAGCTGTTGCAACAAACCCTGTCACAGAGATTGCAGCCACACCAGATGCTTCCGGACCAGCACCCTCAAGAGTTCGTCCCCCAGGCGAGCTTACAATTTCCACCTCAACTGCAACCCCAACATCAACAGATATTGGAGATGCATCACCAACATCAGATATTGTCACATTTGCCTCTGTCCCACCAGCAGCAGCCAAACACCCACCTATATTCTTCAACTGAGAAGCTTCTCAACACCAACAGCTACTCGACCACAAGCCTCATGCAATCCCAGCAGGCTCCTTTGAGCCAATCTCAGGGGCAGTTTAGACCACTCACTACACTCAGACCTCCTGATGGGGATGCTCTCTCATGTTCAACCCCACCCTCCACTAACAGTTGCCAGCTTTCATCTTCAAACCTTCTCGACAGAAACCAAGTTACGCTGGTGGGAGAGTCATCGGTTGAGCCCACCAATACCATGATGGCAGATCTCCAGAGTAAATCAGGGACCCAAATGAAACACGAGTTGCCCCCTGCAATACGACCGGACCAGCTGAAATACAAAGGTGCACTCGCCGATCAGATGGAAGCATCCTCAGGAACAGCATACTGTATGGATCCTGTCACCATTCGCCACATTTCCCCACTCCCCACCTTCTGTTTGGACAGTGATACTCATCCTCATTCTCGGAGCAATCTTCCTTTGACATCAAATATTGATGGGCTAGTGCCAGACACCCTACTCTCTGCTGGATATGACTCTCAGAAAGATCTACAAAACTTACTTTCTGACTACATGGGGATTCCCCCCAGAGAGATTGAGACAGAGTTGTCCACTGCTCTAGTGAATCCTCAGATGCAAGACATGCCTCCTTCCAAGCCTGGCTGCTCCACCGATGTAACCATTAATGAAGCAAGGGCATTGAGTTCTGGACTATGGGCAAACCAGACTCCACGTATGCGAACTTATACAAAGGTTCAAAAGCGTGGATCTGTGGGAAGATGTATTGATGTGACCCGTTACAAAGGATATGATGAGTTGAGGCATGATCTGGCCCGCATGTTTGGGATCGAAGGCCAGCTAGAAGATGTCCAAAGGACCGACTGGAAACTTGTGTATGTGGATCATGAAAATGACATACTTCTTGTTGGTGATGATCCTTGGGAAGAGTTTGTGAGTTGTGTTCAGAGCATAAAGATACTTTCAGCGGGTGAGGTACAGCGGATGAGTTTGGATGGAGATTTTGGTCAGATTCCGAACCCCATTCAAGCTTGTAGCGGAACAGACAGTGAAAATGCATGGAGGGGACAGTGTGATGACAACTCTGCCACGTCCTTCAACCGATAA 3195 47.86 MKAPPNGSSANSGEGERTNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICVLHNVTLHADLETDEVYAQMTLQPVTKYDKQALLLSDLGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFIRDEKSQLLLGLRHANRQHPTLSSSVISSDSMHIGVLASAAHAAANYSPFTIFYNPRASPCEFVIPLAKYNKAMDTQISLGMRFRMMFETEESGVRRYMGTITGISDLDSMHWKNSQWRKLQVGWDESAAGERPSRVSMWEIEPVVTPFYICPPPFFRPKLPKQPGMPDNDSDIENAFKRAMPWLGDDFGITDTQSSIFPGLSLVQWMNLQHNNQFPAATQSGFLQSISNAHAHQNNLISGDPSKLLSFQAPAPPLPGSLQFNKTNHQSQAGKLQQTEQQQEIQQVPQQHQAQSQQQATQQQACRPSSVKTGYSISGPHQISTNQTQQESVIYPERQQHQLLKGNTQSQRFSHSSANRNPSVPQESQMEHKPSLIPNGRNQQQTQLQQQPPLQLLQQQAPLQLLQQQPPLQLLQQTLSQRLQPHQMLPDQHPQEFVPQASLQFPPQLQPQHQQILEMHHQHQILSHLPLSHQQQPNTHLYSSTEKLLNTNSYSTTSLMQSQQAPLSQSQGQFRPLTTLRPPDGDALSCSTPPSTNSCQLSSSNLLDRNQVTLVGESSVEPTNTMMADLQSKSGTQMKHELPPAIRPDQLKYKGALADQMEASSGTAYCMDPVTIRHISPLPTFCLDSDTHPHSRSNLPLTSNIDGLVPDTLLSAGYDSQKDLQNLLSDYMGIPPREIETELSTALVNPQMQDMPPSKPGCSTDVTINEARALSSGLWANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDVQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSAGEVQRMSLDGDFGQIPNPIQACSGTDSENAWRGQCDDNSATSFNR 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41810 48731 + Conep07aG0000700.1 Cone7ag0007 440603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0007 1064 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Cone7ag0007 1064 ProSiteProfiles PB1 domain profile. 937 1030 IPR053793 -
Cone7ag0007 1064 Gene3D - 933 1026 - -
Cone7ag0007 1064 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Cone7ag0007 1064 MobiDBLite consensus disorder prediction 457 540 - -
Cone7ag0007 1064 CDD B3_DNA 125 218 IPR003340 GO:0003677(InterPro)
Cone7ag0007 1064 Gene3D - 124 227 IPR015300 -
Cone7ag0007 1064 Pfam B3 DNA binding domain 126 225 IPR003340 GO:0003677(InterPro)
Cone7ag0007 1064 MobiDBLite consensus disorder prediction 553 600 - -
Cone7ag0007 1064 FunFam Auxin response factor 124 228 - -
Cone7ag0007 1064 FunFam Auxin response factor 932 1026 - -
Cone7ag0007 1064 SUPERFAMILY CAD & PB1 domains 950 1016 - -
Cone7ag0007 1064 Gene3D - 289 360 - -
Cone7ag0007 1064 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag0007 1064 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cone7ag0007 1064 MobiDBLite consensus disorder prediction 1043 1064 - -
Cone7ag0007 1064 FunFam Auxin response factor 289 361 - -
Cone7ag0007 1064 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1028 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag0007 1064 MobiDBLite consensus disorder prediction 471 540 - -
Cone7ag0007 1064 Pfam AUX/IAA family 935 1022 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0985 Cone-Chr6:5395159 Cone7ag0007 Cone-Chr7:41810 4.75E-103 dispersed
Cone7ag0007 Cone-Chr7:41810 Cone7ag0776 Cone-Chr7:4949876 0 dispersed
Cone4ag0837 Cone-Chr4:5421395 Cone7ag0007 Cone-Chr7:41810 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46428 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0007 - - - 0.0