Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0013 | ATGGCCCAAGCTGATGCTACTGCCTCTCTTCAGTCTATCTGCTACAAACGAGGTTCACTGCGCCTCCTCGACCAGAGAAAGCTCCCTCTGGAAACTACTTATTTGGACATACATGATGCTTCTGATGGATGGCACGCAATAAAAGATATGGTAGTCCGTGGGGCACCTGCTATTGCTATTGCTGCAGCTCTTTCTCTGGCCGTAGAAGTCTCTAAATTTGATAGTTTTGATGGCACTTCTGATGATGCAGCTGATTTCCTTGGTACCAAATTGGACTATCTCGTCTCCAGCCGGCCGACTGCTGTGAATCTTTCTGATGCAGCTACTAAACTCAAACAAATTGTATCAGAGGCCGCTGCAACTGCTTCAGAAGGCAGGGGTGTTTTTCAAGCATATGTAGAAGCTGCCGAAATAATGCTGAAGGATGATGTTGCTTCGAACAAAGCAATCGGGTCTTTTGGAGCAACCTTTATTCTGAATCAGCAAAAGGACACTAACAGGCTTTCAGTTCTTACCCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATGGTACTGCTCTTGGGGTAATACGTGCACTTCATTCTCAAGGAGTCCTAGAGAGGGCCTATTGCACGGAAACACGCCCATTCAATCAAGGCTCCAGACTCACGGCATATGAGTTGGTCCATGAAAACATACCTGCTACTCTTATAGCGGATTCTGCTGCAGCTGCACTCATGAAAGATAAGGATCTGCATGCTGTGATTGTTGGAGCTGATCGTGTGGCTGCCAATGGTGACACTGCTAACAAGATTGGAACCTACAGTCTTGCATTGAGTGCAATGCATCATAAAATCCCCTTCTTTGTTGCTGCACCCCTGACCTCAATAGACCTGTCCCTTTCAAATGGGCAAGAAATTATTATCGAGGAAAGGTCAGCAAAGGAGTTGTTGAACTCGAAAGGAGGCCTTGGGGAGCAAGTGGCGGCATCGGGTATATCTGTGTGGAACCCAGCTTTTGACGTGACACCCTCTAATTTAATATTTGGAATCATCACAGAGAAGGGTGTGATTACAAAGACGGGTGCGGATACTTTCAACATTAAGGAATTCATAGAGAAGACTGTCAGGCAGCATCCCGCTTAG | 1128 | 46.45 | MAQADATASLQSICYKRGSLRLLDQRKLPLETTYLDIHDASDGWHAIKDMVVRGAPAIAIAAALSLAVEVSKFDSFDGTSDDAADFLGTKLDYLVSSRPTAVNLSDAATKLKQIVSEAAATASEGRGVFQAYVEAAEIMLKDDVASNKAIGSFGATFILNQQKDTNRLSVLTHCNTGSLATAGYGTALGVIRALHSQGVLERAYCTETRPFNQGSRLTAYELVHENIPATLIADSAAAALMKDKDLHAVIVGADRVAANGDTANKIGTYSLALSAMHHKIPFFVAAPLTSIDLSLSNGQEIIIEERSAKELLNSKGGLGEQVAASGISVWNPAFDVTPSNLIFGIITEKGVITKTGADTFNIKEFIEKTVRQHPA | 375 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 70436 | 73096 | + | Conep07aG0001300.1 | Cone7ag0013 | 440609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0013 | 375 | Gene3D | - | 8 | 200 | IPR027363 | - | |
| Cone7ag0013 | 375 | Gene3D | - | 201 | 366 | IPR042529 | - | |
| Cone7ag0013 | 375 | FunFam | Methylthioribose-1-phosphate isomerase | 8 | 200 | - | - | |
| Cone7ag0013 | 375 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 10 | 356 | IPR037171 | - | |
| Cone7ag0013 | 375 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 11 | 354 | IPR005251 | - | |
| Cone7ag0013 | 375 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 37 | 354 | IPR011559 | GO:0044249(InterPro) | |
| Cone7ag0013 | 375 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 10 | 362 | IPR005251 | - | |
| Cone7ag0013 | 375 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 8 | 369 | - | GO:0019509(PANTHER)|GO:0046523(PANTHER) | |
| Cone7ag0013 | 375 | FunFam | Methylthioribose-1-phosphate isomerase | 166 | 363 | - | - | |
| Cone7ag0013 | 375 | Pfam | Initiation factor 2 subunit family | 52 | 353 | IPR000649 | GO:0044237(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0008 | Cone-Chr4:56389 | Cone7ag0013 | Cone-Chr7:70436 | 1.40E-128 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0013 | K08963 | - | csv:101210526 | 549.666 |