Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0036 ATGCCACTGCATCTCACGCCCAACGCGATCTCTATGATCCTCGCCGGGGACGTCAATTCCAAGCCGCTCCTGCAGGTTCTGGATATCAAACTGATCGGTAACGCGCAGGAGAGATACCGACTCGTCATCTCCGACTCCGTTTCTACTCAGCATGCTATGCTCGCGACTCAGCTTAACGATTCGATCAAGACTGGCCGAGTCAAGAAAGGATCTGTGGTTCAGCTCATAGAGTATATTTGCAGTCCCGTCCAGAACCGCAAGATTATTGTTGTGCTTTCGATGGAAACTATAATGCTGGACTCTGAGATAATAGGGAATCCAACATCAGTTACTGTGTCTGATTCAACTGCTCAAAAGGCATTGCCAAATAAAAACCTTGGGCACTCAACTGGGGTTAACACCGGCCCTTCAAATGCAAAAACCCCTGGTCATAATGTGCAGAACTTCCCACCTACTGTTCAGCCCCAGTATCAACCACCTCCAAATTACAAAAATCGTGGCCCAATTATGAAAAATGAGGCACCTGCACGCATCATTCCTATTGCTGCTTTGAATCCTTATCAGGGTCGGTGGGCTATAAAGGCAAGAGTAACTGCTAAAGGGGACTTACGTCGATACAACAATGCCAGTGGAGATGGAAAGGTTTTCTCTTTTGACCTCCTCGACTCTGATGGAGGAGAGATACGAGTTACCTGTTTCAATGCTGTTGTTGACCGCTTCTATGAGGTCATAGAGGTCGGTAAAGTGTACTTGATTTCAAAAGGAAGCTTAAAACCTGCCAAGAAGAATTTCAACCATCTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACAGTGGACCTTTGTCCAGATGAGGATGGTTCTATCCCTAGACAGCAGTTTGCTTTCAGGACCATCAATGAGATTGAGAACGCTGAAAGCAATTCGATACTTGACACAATTGGTATTGTGATTTCTGTTAATGCGTCGGTTCCTATACTGAGAAAGAACGGCATGGAAACGCAGAGAAGAGTCCTGCATCTGAAAGATACATCGGGAAGAAGTGTTGAGCTTACCCTATGGGGGGACTTCTGCAATAGAGAAGGTCAAAAATTACAAGAAATGGTTGATAATGAGGTCTTCCCAATTTTGGCTGTGAAAGCTGGGAAGGTTAATGATTTTACTGGGAAATCTATTGGGACAATTTCTGCCACACAGCTGTTCGTAGATCCAGATCTTCCTGAGGCTCGCATCTTGAGAGACTGGTATGACAGAGGAGGTAAGAATACAACATCCCTTTCCATTTCTAAGGACAATATGCCAGTTGGATCCAAGAATGAGATTCGCAAGACTGTCTCTCAAATAAAGGACGAAGGCCTTGGAAGATCTGATAAGCCAGATTGGGTCACTGTGAAGGCAACCGTATCTTTCATTAAAACTGATACTTTCTGCTACACGGCTTGCCCATTAAAGATTGGAGAAGATAGACAGTGCAACAAGAAAGTAACCAGGTCAGGAAACTCAAAGTGGCTATGTGACAGGTGCAATCAAGAATTTGAGGAGTGTGATTATAGATATCTTCTTCAGGCCCAGATTCAAGACCACACTGGATTGACTTGGGTGACTGCTTTCCAAGAATCAGGCGAGGAGATAATGGGTGTGTCAGCTAAGGAATTGTACTTGTTGAAGTATGAAGAACAGGATGATGCCAAGTTTGGAGAAATAATTCGGAGCAGAATCTTTAATCAATTTATGTTCAAGCTTAAAATCAAAGAGGAAACATATGGTGATGAACAGAGGGTGAAATCCACTATAGTTAAGGCTGATACTGTGAATTATTCTTCAGAGAGCAGATTTTTGCTTGACTCAATTTCTTGA 1863 43.59 MPLHLTPNAISMILAGDVNSKPLLQVLDIKLIGNAQERYRLVISDSVSTQHAMLATQLNDSIKTGRVKKGSVVQLIEYICSPVQNRKIIVVLSMETIMLDSEIIGNPTSVTVSDSTAQKALPNKNLGHSTGVNTGPSNAKTPGHNVQNFPPTVQPQYQPPPNYKNRGPIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNASGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPAKKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPRQQFAFRTINEIENAESNSILDTIGIVISVNASVPILRKNGMETQRRVLHLKDTSGRSVELTLWGDFCNREGQKLQEMVDNEVFPILAVKAGKVNDFTGKSIGTISATQLFVDPDLPEARILRDWYDRGGKNTTSLSISKDNMPVGSKNEIRKTVSQIKDEGLGRSDKPDWVTVKATVSFIKTDTFCYTACPLKIGEDRQCNKKVTRSGNSKWLCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQESGEEIMGVSAKELYLLKYEEQDDAKFGEIIRSRIFNQFMFKLKIKEETYGDEQRVKSTIVKADTVNYSSESRFLLDSIS 620
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 163234 166077 + Conep07aG0003600.1 Cone7ag0036 440632
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0036 620 CDD RPA1N 9 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone7ag0036 620 Pfam Replication protein A OB domain 301 405 IPR031657 -
Cone7ag0036 620 Pfam Replication factor-A C terminal domain 463 615 IPR013955 -
Cone7ag0036 620 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Cone7ag0036 620 PANTHER REPLICATION FACTOR A 1, RFA1 179 603 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone7ag0036 620 FunFam Replication protein A subunit 290 429 - -
Cone7ag0036 620 CDD RPA1_DBD_B 312 419 - -
Cone7ag0036 620 FunFam Replication protein A subunit 177 286 - -
Cone7ag0036 620 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cone7ag0036 620 SUPERFAMILY Nucleic acid-binding proteins 296 426 IPR012340 -
Cone7ag0036 620 CDD RPA1_DBD_C 447 620 IPR047192 -
Cone7ag0036 620 NCBIfam replication factor-a protein 1 (rpa1) 5 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone7ag0036 620 SUPERFAMILY Nucleic acid-binding proteins 444 619 IPR012340 -
Cone7ag0036 620 Gene3D - 4 111 IPR012340 -
Cone7ag0036 620 FunFam Replication protein A subunit 4 111 - -
Cone7ag0036 620 Pfam OB-fold nucleic acid binding domain 193 272 IPR004365 GO:0003676(InterPro)
Cone7ag0036 620 Gene3D - 290 429 IPR012340 -
Cone7ag0036 620 FunFam Replication protein A subunit 430 620 - -
Cone7ag0036 620 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone7ag0036 620 CDD RPA1_DBD_A 180 283 - -
Cone7ag0036 620 Gene3D - 430 620 IPR012340 -
Cone7ag0036 620 Gene3D - 177 287 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0210 Cone-Chr16:1408756 Cone7ag0036 Cone-Chr7:163234 2.68E-95 dispersed
Cone2ag0799 Cone-Chr2:34010770 Cone7ag0036 Cone-Chr7:163234 1.04E-94 dispersed
Cone7ag0036 Cone-Chr7:163234 Cone8ag0528 Cone-Chr8:3851334 9.21E-252 dispersed
Cone7ag0036 Cone-Chr7:163234 Cone12ag0531 Cone-Chr12:3699430 3.31E-253 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0036 K07466 - csv:101207583 1019.99