Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0054 ATGGCAAAACTGAACATTCCTTCTATTTCAGACAAGCTTTCTTGGGTGAGAGGTAAGTGTATCGGCATGGGCTCTTTCGGTACTGTAAGTCTCGGAGTCTACAAATCCGACGGTAAAATTTTCGCCGTCAAGTCGGTGGATCGAAACACGTGTCTGCCCAACCAGATTGAATCCTTAGAGAACGAGATTAGGATTCTCCAAACACTATCTTCACCGTACGTGGTCGGTTTCCTCCGCGATGATGTCACCTACGAATCCTTGCCCACCGCTACCGTCACCTCCTCGTACCGGAACTTGCACATGGAGTACTTGCCCGGTGGCACCGCTGCTGACGTGCCTCTTGGTGCTGATGCGGACGAGATGACGCTAAGGTCCCGCCTCTGGTGTATAGTCTCGGCGTTGAGGTACGTACACTCGAAGGGCATAGTTCACTGCGACGTGAAGGGGAGAAATATTCTGTTAGATTCCGACAACCCGAATATCGCTAAGCTCGCGGATTTCGGGTCGGCTAGAGACGTCTCCCCCGATACGGGGAGTAAGTTAATTGATATTGGGCCACGTGGAAGTCCTCTGTGGATGGCTCCGGAGGTAATCCGACGAGAATCACAAGGCCCTGAATCCGATATTTGGTCTTTGGGCTGCACGATTATCGAGATGGTGACCGGAAAACCAGCGTGGGAGGATTGCGGCGTTGATACGCTGCGTCGAATCGGTTACTCGGCCACCGAGTTTCCGGAATTTCCGAGTCAGTTATCAGTAACGGGTCGTGATTTCCTCGAAAAGTGTCTTAAAAGGGACCCGAGTCGGCGATGGAGCTGTGATCAGCTGCTGCAGCATCCATATTTGGCGTTGGAATCACAACGTGCCTTGACGGAGTTCTTCTACTCATCACCTCGCTGCGTGCTTGACTGGGTTAATTCGGAGTTTGAAGTCGGAGAAGACGATGAAGAAATCGATGATCATCGGTACTCTGTTTGTGAGAAACAAACGGGTTCTTCCAAGGAGAGGATTGGTAAATTATCCACAAGTTTAGGGGAAAATTGGGAATCTGATGGTTGGATGGCGGTGAGGTTTCCAGCCGATCAAGAAGATTCGGGAGTGGATGAATTGGCGGGTGGTAACTGCAGCAGTTGTGAAGGGACAAGTACGGAATATTCAGAAAATGATGAAAGGATTACTTTCCTTGCAATCTCGGGTGGAGCTGTCAGCGTGGATTATTACTACCCCCACAAGCGTTAA 1239 50.36 MAKLNIPSISDKLSWVRGKCIGMGSFGTVSLGVYKSDGKIFAVKSVDRNTCLPNQIESLENEIRILQTLSSPYVVGFLRDDVTYESLPTATVTSSYRNLHMEYLPGGTAADVPLGADADEMTLRSRLWCIVSALRYVHSKGIVHCDVKGRNILLDSDNPNIAKLADFGSARDVSPDTGSKLIDIGPRGSPLWMAPEVIRRESQGPESDIWSLGCTIIEMVTGKPAWEDCGVDTLRRIGYSATEFPEFPSQLSVTGRDFLEKCLKRDPSRRWSCDQLLQHPYLALESQRALTEFFYSSPRCVLDWVNSEFEVGEDDEEIDDHRYSVCEKQTGSSKERIGKLSTSLGENWESDGWMAVRFPADQEDSGVDELAGGNCSSCEGTSTEYSENDERITFLAISGGAVSVDYYYPHKR 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 238135 239413 + Conep07aG0005400.1 Cone7ag0054 440650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0054 412 Gene3D Transferase(Phosphotransferase) domain 1 14 336 - -
Cone7ag0054 412 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cone7ag0054 412 ProSiteProfiles Protein kinase domain profile. 15 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0054 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 11 283 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone7ag0054 412 CDD STKc_MAPKKK 14 282 - -
Cone7ag0054 412 Pfam Protein kinase domain 17 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0054 412 SMART serkin_6 15 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag0054 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag0054 412 SUPERFAMILY Protein kinase-like (PK-like) 15 286 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0054 Cone-Chr7:238135 Cone8ag1426 Cone-Chr8:11113054 6.07E-60 dispersed
Cone4ag0058 Cone-Chr4:298908 Cone7ag0054 Cone-Chr7:238135 9.73E-243 wgd
Cone5ag0198 Cone-Chr5:824922 Cone7ag0054 Cone-Chr7:238135 8.65E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82989 PF08381 BRX 1.50E-27 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0054 - - - 0.0