Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0064 ATGGGTGGCTCCTCACCATGTGCTTCCTGCAAGCTGTTAAGGCGTCGATGTGCAAAGGACTGCATCTTCGCTCCTTACTTCCCTTCCGATCAGCCCCACAAATTTGCAACTGTTCACAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGGTTCCACTGTATCAAAGAGCGGATGCAGTGTGCAGTTTGGTGTACGAGGCAAATGCAAGAATCCGGGACCCGGTTTACGGATGTGTTGGGGCGATATCGTTGCTAGAGAATCGAGTGTCGCAGCTGCAGAACCAGTTGGCTATAGCTCAAGCCGAGATACTTTGCATCCAAATGCAACAAGAGATCAACAACCCTAAGTATAGTTCCAGCTTACCATTGTTCCATTTAGACCAAGGTGACATGTCGCTCCTTCTATCGAGTAATTCTCACAGTAACTTCAATCATATTTCCCAGTCCCTCGGATTTGCTAACTCCTCCGGAAACAATGTAATCCAAGATCCTCTCAAGAAAGAATCCTTCTGGGCTTAA 528 46.97 MGGSSPCASCKLLRRRCAKDCIFAPYFPSDQPHKFATVHKVFGASNVSKMLQEVPLYQRADAVCSLVYEANARIRDPVYGCVGAISLLENRVSQLQNQLAIAQAEILCIQMQQEINNPKYSSSLPLFHLDQGDMSLLLSSNSHSNFNHISQSLGFANSSGNNVIQDPLKKESFWA 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 276888 277492 - Conep07aG0006400.1 Cone7ag0064 440660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0064 175 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cone7ag0064 175 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cone7ag0064 175 Coils Coil 85 112 - -
Cone7ag0064 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0786 Cone-Chr18:4481951 Cone7ag0064 Cone-Chr7:276888 1.04E-68 dispersed
Cone1ag1647 Cone-Chr1:57740210 Cone7ag0064 Cone-Chr7:276888 2.57E-61 dispersed
Cone3ag1477 Cone-Chr3:33465382 Cone7ag0064 Cone-Chr7:276888 5.37E-18 dispersed
Cone7ag0064 Cone-Chr7:276888 Cone8ag1587 Cone-Chr8:11808670 5.07E-58 dispersed
Cone17ag0097 Cone-Chr17:522859 Cone7ag0064 Cone-Chr7:276888 1.38E-21 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone7ag0064 Cone-Chr7:276888 1.82E-21 wgd
Cone4ag0070 Cone-Chr4:352109 Cone7ag0064 Cone-Chr7:276888 6.90E-109 wgd
Cone5ag0176 Cone-Chr5:730885 Cone7ag0064 Cone-Chr7:276888 4.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46435 PF13359 DDE_Tnp_4 7.00E-30 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0064 - - - 0.0