Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0079 ATGAGGTCCAAGATTTGCATGAATTCTTCGTGTGGGACGACCACCAGTCAGGAGTGGAAGAAAGGATGGCCTTTAAGATCCGGTGGATTTGCAAATCTCTGCCACAGTTGTGGATCTGCGTTTGAGAATTCCGTTTTCTGTGATACCTTCCACTCAGAAGAAAATGGTTGGAGGGATTGCAGGTTATGTGGAAAGAGTATCCACTGTGGATGTATAGTCTCTATGTCTTCATTTGAGTGTCTCGATTTTGGGGGCATAGGGTGCAGTAGCTGCTATAAAGGTTCCCATCTTCCCTCTATCAGGAGGGATGAAATTTCTAATGGTTTTCCGGCACTTACCATGAGTAATGTTGGTGATCTGCAATCTACTCCTGTTGGGACTAGTGTGCTCGGCGATAGTATTGATGAGGGAAAACTTTTGCAGTTGTGCCAAGTGATGGAGGCTAATGACACTAGTCTTCTGCTCCATACCCAGAGAGTTGAGACAAGTGCAGCTCTTGGAGAAACCAAATTAGAAAGGATCATATTTCCATTTGGGGAAGTTGGCTCGAGCTTTCCGAATGTAACTCAGTCATTCATTGGATCATTAAGGTTCACTAAAGCGGACAATAATAGAACTTTCTTAGAGGTAAAAGAAAAGTATCCGGAAGTTAACGATAAGTATGAATCCCTTGCTCAACCGTCTTTGAGTATGAGTCTGGGGGCCCCATCAGGAAGTCCGAGCATTGTTCCCTTTTCTGGAGGGGCAATAGATGTGAGAGAGCAGAGCAATGGCCCTTCTCCTCTGCAACCGGGCCAAAAATCTCATCCTATATTACCTAAACCATTGAAAACAAGCCCTACTGCAAATTCAGCATCAAGCAAGGGCACATTACGTCAGATGCGTATTGCTAGGCCACCTGCTGATGGGCGGGGAAGGAACCAGTTACTTCCGCGATACTGGCCAAGGATTACAGACCAAGAGTTGGAGCAAATCTCTGGAGATTTGAATTCTACCATTGTTCCACTATTTGAGAAGGTATTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTCTGGTTCTCCCAAAAGCTTGTGCTGAAGCATATTTTCCCCCTATTTCTCAATCTGAAGGCCTTCCTATAAGAATACAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTTTTGGAGGGTGTTACTCCTTGCATCCAGTCCATGCAATTACGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGAAAACTTGTCATGGGGTTTCGAAAGGCAACAAACTCTAGTGATATGCAGGATGCTCAGGCATCTCTCCTTGATGGCTCTCATTCTGGTGAAACTTCATTATCTGGAGTTGTAGAGAATTTGCCCATGGGAGCTGATGGGAATAATGGTTTGCATAAGAGTGTGAATCATGGGGTCAAGAAGAATGAAAATTCACTGCAAGGACCAATGCTGACTATGGAGAATAAGCGGACTCGGAATATAGGGACTAAGAATAAGAGATTGCTCATGCATTGTGAAGACGTCCTGGAACTGAGACTTACATGGGAAGAAGCACAGGACTTACTTCGTCCACCACCTAATGTGAAACCAAGCATTGTTGCCATAGGGGATCATGAATTTGAAGAGTATGATGAACCTCCGGTTTTTGGCAAGAGGACTATATTTATTTCCCAACCATTGGGGGGACAGGAGCAGTGGGCGCAGTGTGATGATTGCTTGAAATGGAGGAGGTTGCCCGTTGATGTCCTTCTCCCTCCAAAGTGGACTTGCTCGGATAATGCTTCGGACTTGAGCAGGTATTCGTGTACCGCACCTGAAGAGATAGGTCTGAGGGAATTGGAGATTCTCCTTCGAGGGAAAAAAGAGTGTAAAAAGCAAAGAATTGAAGAAAGCCATAGTCCCAATCAAGAATGTGAGCCATCAGGCTTAGATGCTCTGGCAAGTGCTGCCGTTCTAGGAGACAATGGTGGTGACTATTTTCATGGAGCCACCACTAAACACCCAAGGCACCGTCCAGGCTGCACGTGCATTGTGTGCATTCAGCCTCCAAGCGGGAAGGGCAAGCACAAGCCCACCTGCACATGCAATGTCTGCATGACTGTAAAACGCCGGTTCAAAACCCTCATGCTGCGCAAGAAGAAACGCCAGTCTGAACGTCAAGAAGTAGTAGATGTACCCGAGTCTAGTGCAAGGAAGGATGCTAAGGATGAATCACAAGATAATGGCACATCAGTAGATGCACTACAGTTGCAAACTAGTCGGTCAGAGAGTGAAGGCAGCCAGAGCTTCCGGATTCAAGGGGAGGCAGGAGATAATGCTGGTGGGAAGATTGACCTAAATTGCGATCCAAACCGGGACGACATGATGCAAGTGGAGAAGGAAGTGGGAGTGCAAAGCAAGAGTTGCCTGGTTCAAAACGGGCATTCAATCTTATCATGTGAGGAGCAGGCTGGTCCTACTGGTCTAGAAGGATCAACTTTGCCTGCGGAAAGCACCGGACAGAGTCAGAGCGAGAAACTAGTTTCCGATGAGGGTTGCCTCAAGCCTCTACCTTGTGAGCTCGAGTCTACGAGTGAAGGAGTCCAAGAACCTGATTTAGATTCACAACAATTTTGA 2658 46.24 MRSKICMNSSCGTTTSQEWKKGWPLRSGGFANLCHSCGSAFENSVFCDTFHSEENGWRDCRLCGKSIHCGCIVSMSSFECLDFGGIGCSSCYKGSHLPSIRRDEISNGFPALTMSNVGDLQSTPVGTSVLGDSIDEGKLLQLCQVMEANDTSLLLHTQRVETSAALGETKLERIIFPFGEVGSSFPNVTQSFIGSLRFTKADNNRTFLEVKEKYPEVNDKYESLAQPSLSMSLGAPSGSPSIVPFSGGAIDVREQSNGPSPLQPGQKSHPILPKPLKTSPTANSASSKGTLRQMRIARPPADGRGRNQLLPRYWPRITDQELEQISGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPIRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKATNSSDMQDAQASLLDGSHSGETSLSGVVENLPMGADGNNGLHKSVNHGVKKNENSLQGPMLTMENKRTRNIGTKNKRLLMHCEDVLELRLTWEEAQDLLRPPPNVKPSIVAIGDHEFEEYDEPPVFGKRTIFISQPLGGQEQWAQCDDCLKWRRLPVDVLLPPKWTCSDNASDLSRYSCTAPEEIGLRELEILLRGKKECKKQRIEESHSPNQECEPSGLDALASAAVLGDNGGDYFHGATTKHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKKRQSERQEVVDVPESSARKDAKDESQDNGTSVDALQLQTSRSESEGSQSFRIQGEAGDNAGGKIDLNCDPNRDDMMQVEKEVGVQSKSCLVQNGHSILSCEEQAGPTGLEGSTLPAESTGQSQSEKLVSDEGCLKPLPCELESTSEGVQEPDLDSQQF 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 345413 352172 - Conep07aG0007900.1 Cone7ag0079 440675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0079 885 MobiDBLite consensus disorder prediction 755 781 - -
Cone7ag0079 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 837 - -
Cone7ag0079 885 MobiDBLite consensus disorder prediction 246 308 - -
Cone7ag0079 885 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Cone7ag0079 885 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677(InterPro)
Cone7ag0079 885 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Cone7ag0079 885 MobiDBLite consensus disorder prediction 828 885 - -
Cone7ag0079 885 Gene3D - 573 622 - -
Cone7ag0079 885 MobiDBLite consensus disorder prediction 277 291 - -
Cone7ag0079 885 SUPERFAMILY DNA-binding pseudobarrel domain 334 438 IPR015300 -
Cone7ag0079 885 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677(InterPro)
Cone7ag0079 885 MobiDBLite consensus disorder prediction 725 798 - -
Cone7ag0079 885 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Cone7ag0079 885 CDD B3_DNA 335 436 IPR003340 GO:0003677(InterPro)
Cone7ag0079 885 Gene3D - 315 442 IPR015300 -
Cone7ag0079 885 SMART B3_2 337 437 IPR003340 GO:0003677(InterPro)
Cone7ag0079 885 MobiDBLite consensus disorder prediction 728 754 - -
Cone7ag0079 885 MobiDBLite consensus disorder prediction 839 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0444 Cone-Chr10:2059162 Cone7ag0079 Cone-Chr7:345413 1.60E-265 dispersed
Cone1ag0130 Cone-Chr1:731629 Cone7ag0079 Cone-Chr7:345413 1.28E-158 dispersed
Cone2ag0012 Cone-Chr2:100848 Cone7ag0079 Cone-Chr7:345413 6.61E-19 dispersed
Cone3ag0477 Cone-Chr3:2322193 Cone7ag0079 Cone-Chr7:345413 1.17E-223 dispersed
Cone5ag1737 Cone-Chr5:12341206 Cone7ag0079 Cone-Chr7:345413 6.67E-162 dispersed
Cone6ag1055 Cone-Chr6:6165899 Cone7ag0079 Cone-Chr7:345413 4.93E-136 dispersed
Cone4ag0088 Cone-Chr4:423233 Cone7ag0079 Cone-Chr7:345413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46437 PF01370 Epimerase 8.40E-25 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0079 K09287 - rcu:8281998 1019.99