Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone7ag0084 | ATGGTTCTTATGGAGGTGAAAAATAAATTTCTTGCGGAACTTGAAGCTATGGAGTTTCCAAGGGCTCGAGCAGTCCGAGCACTTTATCATACCGGTAACGCTAGCTGTGAGGATGCTGTAAATTGGATCGTCGATCATGAGAACGATCCAGATATCCATCAAATGCCTCAGGTAGCAATAGATATTGATATTGAATCCCCGGAACCGGTTCGTATGACTGAAGAAACAAAAAGGAACACACAGGAACTACGGGACCGGATACGCGAGAAAAAGGCAGAGGAAGAAAAGAGACCAGAAAGACAGAGAGAAAAGGAAAGGGTTCGTGCTGGCAAGGAACTTACCGGGGCAAAGAGAGTAGCAGAAGAAAATGAAAGAAAACGTTATTTAGACTCATGGAAGGCTGAGAAAGAGGAGGAGAAAAAGGCAAGGGAAACAATTCTACAGAAACTTGGTCAAGATAAGGCAGAGAGGAGGAGAAAACATGGGCTGCCACCAGAAAGGCGGCCTGAAGATGAAAAACCTTTCATAAATGTTGCACCGAAAAAAGTGAGTAGTTCTTCCCTTATGTCTGTTGAGAAGGCTGGCTCCATGAGAGAATGTTTAAGATCTCTCAAGCGTTATCACAAGGATGATGCTAGCAGAGTTAGACGAGCCTTCCAAACTCTTTTGGTCTATATCAGAAACGTCGCGAGAAATCCCGATGAGGAAAGGTATAGGAAGATTCGACTGAGTAATCCAGTATTCCAGGATAGAGTTGGGAGTTTAAGCGGAGGTATTGAGTTTCTCAAGCTATGCGGCTTTGAGAAAGTAGGGACCGAGTTCCTTTATCTTCCCCGTGACAAGGTTGACATGGCACTACTAAACGGTGCTGGATCTCAATTACAGTCTGCGATCACTAATCCTTTCTTTGGACTTCTATGA | 921 | 44.19 | MVLMEVKNKFLAELEAMEFPRARAVRALYHTGNASCEDAVNWIVDHENDPDIHQMPQVAIDIDIESPEPVRMTEETKRNTQELRDRIREKKAEEEKRPERQREKERVRAGKELTGAKRVAEENERKRYLDSWKAEKEEEKKARETILQKLGQDKAERRRKHGLPPERRPEDEKPFINVAPKKVSSSSLMSVEKAGSMRECLRSLKRYHKDDASRVRRAFQTLLVYIRNVARNPDEERYRKIRLSNPVFQDRVGSLSGGIEFLKLCGFEKVGTEFLYLPRDKVDMALLNGAGSQLQSAITNPFFGLL | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 370321 | 377459 | - | Conep07aG0008400.1 | Cone7ag0084 | 440680 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone7ag0084 | 306 | CDD | PUB_UBA_plant | 201 | 306 | - | - | |
| Cone7ag0084 | 306 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Cone7ag0084 | 306 | Pfam | UBA-like domain | 9 | 53 | IPR015940 | - | |
| Cone7ag0084 | 306 | SUPERFAMILY | PUG domain-like | 206 | 302 | IPR036339 | - | |
| Cone7ag0084 | 306 | CDD | UBA_PUB_plant | 5 | 52 | - | - | |
| Cone7ag0084 | 306 | SUPERFAMILY | UBA-like | 6 | 55 | IPR009060 | GO:0005515(InterPro) | |
| Cone7ag0084 | 306 | Gene3D | - | 8 | 53 | - | - | |
| Cone7ag0084 | 306 | Coils | Coil | 73 | 97 | - | - | |
| Cone7ag0084 | 306 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Cone7ag0084 | 306 | Coils | Coil | 129 | 149 | - | - | |
| Cone7ag0084 | 306 | Gene3D | - | 199 | 296 | - | - | |
| Cone7ag0084 | 306 | MobiDBLite | consensus disorder prediction | 71 | 126 | - | - | |
| Cone7ag0084 | 306 | Pfam | PUB domain | 214 | 283 | IPR018997 | - | |
| Cone7ag0084 | 306 | SMART | PGNneu | 217 | 279 | - | - | |
| Cone7ag0084 | 306 | MobiDBLite | consensus disorder prediction | 147 | 173 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0410 | Cone-Chr4:1864068 | Cone7ag0084 | Cone-Chr7:370321 | 7.79E-91 | dispersed | |
| Cone6ag0375 | Cone-Chr6:1826523 | Cone7ag0084 | Cone-Chr7:370321 | 3.07E-08 | dispersed | |
| Cone7ag0084 | Cone-Chr7:370321 | Cone9ag0404 | Cone-Chr9:1870228 | 1.08E-07 | dispersed | |
| Cone7ag0084 | Cone-Chr7:370321 | Cone7ag0399 | Cone-Chr7:1775254 | 3.25E-102 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone7ag0084 | K24348 | - | csv:101210384 | 350.903 |