Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0089 ATGTACTTGCGCCTTATCCAAAGAGACGGTCGAAACGGAATGTCATCGTCGCCGTCGCCGCCTTCATCGTCGTGGGCGTGGCACTTGAAGACGGAGATTATACCCGGAGGAGGTCTGATTTCATTACCCTCATTATTTTCTGGGAGGCGAAAGCAAAGGAAAAGCCGTAATAAAGGAATAGTGTTAGTCTCTGCAGCAGCAGCTACCCCGATATCTATCTCTAATGCGGAAACGAAGGACCGCCTCGAGCTGAAGCGACTCTTCCGGGAAGCTTACGAACGCTGCCATGCTTCTCCCACTGAAGGCCTGTCCTTCACGCTGCAAGACTTCTTAGCTGCTCTCGACAGCTACGACTTTGATCCTCAAATAGGAAGCCGGGTAAAAGGCACTGTGTTGTCTATAGATGTTAGTGGCGCACTTGTTGACATTACTGCAAAGTTATCACCTGCATACTTGCCCGTAGAAGAGGTCTGCATTCGCAGGATAAAAAATGTTGAAGAAGCCGGCATTTTTCCTGGCCTCACAGAGGAATTTGTAGTCATCGGCTCAAATGAAGCAGATAATAGCTTGATTCTGAGCCTGAGGTCTATTCAGTATGAACTCGCTTGGGAGCGATGCAGACAGCTTCAAGCTCAGGATGTCGTTCTTAATGGTAAAGTTGTTAGCTTGAACCACGGCGGAGTAGTGGCTGTTGTTGAGGGCCTAAGAGGATTTGTTCCTGTCTCACAAATATCAACCAAAGCAACGGCGGAAGTGCTTCTTGGTAAGACGCTTCCGCTGAAGTTTGTGGAGGTTGCTGAGGAACAGTCTAGGCTTGTACTCAGTAATCGCAAGGCTATAGCTAGCAGCCAGGCACACATAGTAATTGGGTCAGTAGTTATTGGAACTGTTCAGAGCCTAAAACCGTATGGTGTGTTTGTCGACGTATGCGGAATAAACGGCCTTCTTCATATCAGCCAAATCAGTCATGGTTACATATCTGATATTGCAACACTTCTTCAACCTGGTGATACTCTCAAGGTGATGATATTGAGCCATGACCGTGAGAAGGGTCGAGTCAGTCTTTCTACCAAGAATTTAGAACCCATTCATGGGGACATGATTCGAAACCCGAAGTTTGTGTTTGAGAAGGCTGAGGAAATGGCAGAGAAATTCAGGCAGCAATTAGCCCAAGCAGAAGCTATGGCTCGAGCAGAATGCTTAGATTCAGCATGA 1215 47.33 MYLRLIQRDGRNGMSSSPSPPSSSWAWHLKTEIIPGGGLISLPSLFSGRRKQRKSRNKGIVLVSAAAATPISISNAETKDRLELKRLFREAYERCHASPTEGLSFTLQDFLAALDSYDFDPQIGSRVKGTVLSIDVSGALVDITAKLSPAYLPVEEVCIRRIKNVEEAGIFPGLTEEFVVIGSNEADNSLILSLRSIQYELAWERCRQLQAQDVVLNGKVVSLNHGGVVAVVEGLRGFVPVSQISTKATAEVLLGKTLPLKFVEVAEEQSRLVLSNRKAIASSQAHIVIGSVVIGTVQSLKPYGVFVDVCGINGLLHISQISHGYISDIATLLQPGDTLKVMILSHDREKGRVSLSTKNLEPIHGDMIRNPKFVFEKAEEMAEKFRQQLAQAEAMARAECLDSA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 387318 389486 - Conep07aG0008900.1 Cone7ag0089 440685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0089 404 ProSiteProfiles S1 domain profile. 213 277 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 SUPERFAMILY Nucleic acid-binding proteins 210 280 IPR012340 -
Cone7ag0089 404 Gene3D - 208 282 IPR012340 -
Cone7ag0089 404 Gene3D - 110 207 IPR012340 -
Cone7ag0089 404 SMART S1_6 210 277 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 SMART S1_6 288 358 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 SMART S1_6 122 195 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 SUPERFAMILY Nucleic acid-binding proteins 119 221 IPR012340 -
Cone7ag0089 404 Gene3D - 283 361 IPR012340 -
Cone7ag0089 404 ProSiteProfiles S1 domain profile. 124 195 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 CDD S1_RPS1_repeat_ec2_hs2 213 277 - -
Cone7ag0089 404 ProSiteProfiles S1 domain profile. 290 358 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 FunFam 30S ribosomal protein S1 108 206 - -
Cone7ag0089 404 Pfam S1 RNA binding domain 289 358 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 Pfam S1 RNA binding domain 214 275 IPR003029 GO:0003676(InterPro)
Cone7ag0089 404 PANTHER 30S RIBOSOMAL PROTEIN S1 72 397 IPR050437 GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0006412(PANTHER)|GO:0009570(PANTHER)
Cone7ag0089 404 Coils Coil 375 395 - -
Cone7ag0089 404 SUPERFAMILY Nucleic acid-binding proteins 285 362 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0089 K02945 - - sly:101247851 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0714 Cone-Chr15:3963298 Cone7ag0089 Cone-Chr7:387318 3.59E-166 dispersed
Cone4ag0750 Cone-Chr4:4159831 Cone7ag0089 Cone-Chr7:387318 7.20E-10 dispersed
Cone7ag0089 Cone-Chr7:387318 Cone7ag0698 Cone-Chr7:3968274 6.00E-10 dispersed
Cone14ag0701 Cone-Chr14:3786694 Cone7ag0089 Cone-Chr7:387318 2.35E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053996 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1