Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0091 ATGAATCCAAGGAGAGACGAAATCTTCCCCGACGAAGTCGTCCTTCAGATTCTGGCAAGACTGCCCGTAAAATCCCTTTTCAGAAGCAAAGCCGTCTGCAAACTCTGGTACGAATTAGTATCCGACAAGTACTTCTGTCAAATCTACAACGACCTATCGATCAAGAAGCCCATGGTATTACTCGAGATTTCGAATTCCTCATCCAATTCGAAATCCAGTTTGATATGCGTCGATGATTCCAGAGGCGTCTCGGAATTCTCCCTCGATTTCTTAAAAGACAGAGTCAAGGTTCGAGCCTCGTGTAACGGACTGTTATGCTGCTCAAGCATTCCCGACAGGGGCGTCTACTACGTCTGCAATCCTACCACTCGCAAATTCAAGCTCCTTCCGAAAAGCAGGGAAAGACCCATAACCAGATTTTATCCAGACGGCGAAGCTACACTTGTCGGTTTAGCATGCAATCTATCAACTCCTCACAAATACAATGTCGTTTTGGCCGGCTACCATCGCGCCTTCGGCCATAGACCGGGCGGAACCTTTATATGTTTAATCTTCGATTCGGAATCAAACAGGTGGAGAAAGTTGGTCACTTTTCGCGACGATCATTATCAGTTCACTCTTATGAGCAGAAAACAAGCCGTGTTCGTAAACGGCGCGCTTCACTGGCTATCCGTAAGCCCGTCTTATGCCATCATACTGGCACTTGATCTGGATTCCGACACCTGGAGAAAAATGGCGTTTCCCGATGAGGTGAGCAGTTACGGGTCAGGGAACAGGGTGTATTTGCTGGAGCTGGATGGGTGCTTGTCTGTGGTAGAGATTTCTGAAGCTTGGATGAAGACATGGGTTATGAAGAAGGAGGGATACGAAACGGGTGTATGGAGCATGGTGGATAGGGTCAGTCTGAGGTGTATAAGAGGGATGGTGTCAGGTGTGTTTCCGATCAGTCAGACGGCCGAGTATATCTACTTGGCTACTAACAAGCAGGTGTTGGTTTATCAACGCAAGAGCCAGGTGTGGAAGGAGATGTATGGTGTGAAGAACAATCTGGATCTTCCCCTGTGGTTTTCTGCACAATCGTTTCAGACTACGATGTCCTCTTGTCTATGA 1110 47.57 MNPRRDEIFPDEVVLQILARLPVKSLFRSKAVCKLWYELVSDKYFCQIYNDLSIKKPMVLLEISNSSSNSKSSLICVDDSRGVSEFSLDFLKDRVKVRASCNGLLCCSSIPDRGVYYVCNPTTRKFKLLPKSRERPITRFYPDGEATLVGLACNLSTPHKYNVVLAGYHRAFGHRPGGTFICLIFDSESNRWRKLVTFRDDHYQFTLMSRKQAVFVNGALHWLSVSPSYAIILALDLDSDTWRKMAFPDEVSSYGSGNRVYLLELDGCLSVVEISEAWMKTWVMKKEGYETGVWSMVDRVSLRCIRGMVSGVFPISQTAEYIYLATNKQVLVYQRKSQVWKEMYGVKNNLDLPLWFSAQSFQTTMSSCL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 400815 403474 + Conep07aG0009100.1 Cone7ag0091 440687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0091 369 SMART fbox_2 9 49 IPR001810 GO:0005515(InterPro)
Cone7ag0091 369 NCBIfam F-box protein interaction domain 100 334 IPR017451 -
Cone7ag0091 369 PANTHER BNACNNG10540D PROTEIN 5 354 IPR050796 -
Cone7ag0091 369 Pfam F-box domain 9 46 IPR001810 GO:0005515(InterPro)
Cone7ag0091 369 CDD F-box_AtFBW1-like 7 45 - -
Cone7ag0091 369 ProSiteProfiles F-box domain profile. 3 52 IPR001810 GO:0005515(InterPro)
Cone7ag0091 369 SUPERFAMILY F-box domain 9 57 IPR036047 GO:0005515(InterPro)
Cone7ag0091 369 Gene3D - 8 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0091 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0231 Cone-Chr11:1130524 Cone7ag0091 Cone-Chr7:400815 8.48E-15 dispersed
Cone18ag1253 Cone-Chr18:8846416 Cone7ag0091 Cone-Chr7:400815 8.11E-16 dispersed
Cone7ag0091 Cone-Chr7:400815 Cone9ag1152 Cone-Chr9:8164242 6.94E-19 dispersed
Cone4ag0097 Cone-Chr4:468130 Cone7ag0091 Cone-Chr7:400815 6.52E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g32 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0091 Cone4ag0097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019508 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 4