Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0105 ATGCATTATGGATTTTGGGAGCTCGGATTGCAAAACTGTAGAATAGCGTCTCGTATATTTTGGGGCACTCCTCTGGATAATGATATCATGACAAATTCGGAAGGTTTCGTAAGAAATATGCCTCTAAGAAAGTTCGTTCCTTCTGGTGATGCACCTTCTATTAGTAGGAAACATATAAGTTTTCCCATGAAGTTGTACAGGGAATCTCAACTTCTAGAACCTGGGACAAACCATGCAGTGGAGCCTGATGTGGAAATTGACATTAGAGAAGTCTATTTCCTTATCATGCATTTTCTTGCTTCTGGGCCATGCCATAGAACTTCTGAACAGTTACGTAATGAACTTCTTGAACATCAACTTCTACCCAAAAGATATCATGCTTGGTACTCGAGGAATGGGCAATGTAGTGGGGATGACCATGACGATGGCCTGTCATTCCCATTGAGTTACAACAAGTTGGTAGAGAGGTACCCCCACATTGGAGCGGATCATTTGATAGTGCTTATGAAACAGTTGATATTACATAAATATCCCCCTTCACCGGGCATGAGGAGTGGAAATGCTCCAAATGCTGCTGATATACCTACTTTGCTAGGAACCGGTTCATTTTCACTTATTGGCAATGACAGAGAGGAAGGGATCACTGAAGCCAATCGCCCCCCTGCTTATATGCGTTGGCCTCATATGAAAGCTGATCAGGTTCGTGGGCTAAGTTTGAGAGAAATAGGGGGTGGATTCTCTAGACATCAACGTGCCCCCTCTGTTCGTGCTGCATGCTATGCCATTGCTAAGCCGTCGACAATGGTACAAAAGATGCAAAATGTCAAGAAGCTAAGGGGGCACCGAAATGCTGTTTACTGTGCAATATTTGATCGCTTGGGGAGGTATGTAATTACTGGTTCAGACGATCGTCTTGTAAAAATCTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGTGGACATGAAGGTGATATCACTGACTTGGCTGTGAGTTCCAACAATGCTGTGGTAGCGTCTTCTTCCAATGATTTTATCATCCGTGTTTGGCGTTTACCTGATGGGCAACCAATTGCTGTACTGCGAGGACATTCGGGTGCTGTTACTGCCATTGCATTCAGTCCCAGGCTTGGTTATCAGCTTCTATCATCGTCTGATGATGGAACATGTAGGATGTGGGATCTTAGGAATTCTTCCCAGCATGCTGCTCGGATTTACATTCCGAGGCCTTCAGATGCTGTGGCTGGAAGAAATAGTGGTCCTTCCTCAAGCACCGTTCCACAGGGCCATCAAATCTTTTGCTGTTCATTTAATGCTAATGGAACTATTTTTGTCACTGGTAGCTCAGACACACTTGCAAGGGTGTGGAGTGCTTGTAAACCAAATAGTGAAAATTCAGATCAACCCATTCATGAAATAGATGTCTTAGCTGGCCATGAGAATGATGTCAACTATGTTCAATTTAGTGGGTGTGCTGTAGCATCTAGATTTACTGCAGCTGAGAAGGAAGTCAATGTTCACAAGCCTAAAAATATGTGGTTTAATCATGACAACATAGTTACCTGTTCCCGGGATGGCAGTGCAATTATTTGGGTCCCTAGGTCACGTAGATCACATGGGAAAGGTGGCCGGTGGACCCGAGCCTATCACCTAAAAGTTCCTCCCCCACCAATGCCTCCACAACCTGCACGGGGAGGACCTCGTCAAAGGATTCTTCCGACTCCTCGTGGTGTTAATATGATTATCTGGAGCCTAGATAATCGGTTTGTCCTTGCGGCCATTATGGATTGTAGAATATGTGTTTGGAATGCTTCTGATGGTAGCTTAGTGCACTCTTTGACGGGTCATACTGATTCTACATATGTTCTAGATGTACATCCTTTCAACCCAAGGATAGCAATGAGTGCTGGCTATGATGGAAAAACAATAATCTGGGATATCTGGGAAGGCACGCCTATTCGGACATATGAAATTTCCCGTTTCAAACTGGTGGATGGGAAGTTCTCATCGGATGGGACATCAATTATACTTTCAGATGATGTTGGTCAGCTATATATTTTAAGCACGGGACAAGGCGAGTCCCAAAAGGATGCTAAATATGACCAGTTCTTTCTTGGTGATTACCGCCCACTTATTCATGATACCCATGGGTCTGTAATTGACCGGGAAACTCAGCTTACTCCATACAATCGGAATATGCAAGATCTCCTATGTGACTCAGGCATGATCCCCTACCCAGAACCTTATCAGAGCACATATCAGCAAAGACGGTTAGGAGCTTTGAGAATTGAATGGAAGCCTTCTTCTCTTAGACTTTCTGTTGGGCCTGACTTCAGTCTGGATCAGGATCACCAAATGCTGCCTTTGGTGGACTTAGATATGTTATTGAGTAATCCACTGCCAGAGATTTTAGATGTCATGGATTGGGAGCCAGAAAATGAAGTTCAAAGTCATGATACTGATTCAGAATACAATGTTATTGAAGATGACTTTTCGGGAGGCGAGCCGGGAAGTTTGATTTCAAACTCCTCAGTTGATCCAGAAGGCAGTGATGAAGAAACTGGGGTTGAAGACCAAACAGTTAGTCTTCGTAGATCAAAAAGGAAACAAAGGAAGGGTGATATTGAGATCATGAGTTCATCTGGAAGACGTGTCAAAAGGAGAAATTTGGAAGAGTGTGACGGCAATTCAGTTCGAGATAATAGACCTAGGAATCCAAGAGCAGGTCATAAACATTCCAAGAAGAAATCAAAATCAAAGACATTTAGACCCCGAAGAGCTGCTGCACGCAATGCACTTCATTTATTTTCTAAAATTACGGGAACATCTACAGATGGAGAGGATGAAGATGGTTCAGGACTTGATCTATCAGAGAGTGAGTCCTCATTGCAAGATTCTGACATTGAAACTGATGAATCTGAGAAGTCCTTGCAAAATACAGCCCGACATTTGAAAGGAAAGGAAGTGGTCCTTGATGAAACTGAGGATGTAAATGCTGCAAATAAGAGGTTGATTCTCAAATTTCCAAGTAGGTTTTCAACTAAGCATCTGCATCCAGTGAGCGCAATGAACTATTGTTCCAACCCGAATGAAGCGGTTGGCTCATCATCAGAAGCTCGTTGTGAAGCCATTGAAGCGAATCATTGTCAAACTAAGCTACTGAATCCTGAGTATTCTTTTGGTCAGGCAAATGCTCCTGCAAGAGCAGGAGAGTTATTAGACGATGTTGAAGGTAATTTATGTCTGTCTGAGGCAAACCAAAATGGGAACATTAGATGGGGTGGGTCTCGGGCTCGCACAGCCAAGCGTCTGAGAATGGGAGAAACCTTCTCTTCCGGTACCCATACAAGGTCTAGCGTGTGTCTGGATGGTGACATTCATGGACATTTACAACCAGAAAATAAGTGCACTGCAGTCTCTCCTCAGTCAAAGATACAAGGATATGGGGCTGAAATGGGCACAGTGGCTCTAACAGATACCAATGACAAGGGTGCCAGTCCTCTCGAGGGTTTTCCGGTTGTGGCCAATGGTGAAAATCCCACATGTTCTAGCGATATTGGGGGTAACGGTGCATCATCAAAAGTGGAATTCACAGGCCCTTTTGATACAACTTCTGCATCTATCCAGAAGCCTATCTGTGATGATGTCATTCCTACTCCTACAAAGATCAGGTTGAATGATACGGCCATGGATCCTGAAATTACCAAGTATGAGATGAATTCCTTGCCTGAAAACTCTACCGGTAATTTTAGTTCCTTACCCGAAAGATCTTCACATCTACTTGTTACTCAGGATGATAGGATAAATAGAAATAATTCAGACAACAGAAATGATGGCTCACCTGAATCAAAAATTCTGATAGATAAAAAATATCTGTCAACTTCCCAAGGCTCAACGGAGTTGGATAGACCGATGGACAAAATGTACAGTGCTGTCTACCGAAGAACAAGATCACATAAAGGTCGGACCAACTTGGAAGGGGGTATCGATATTGGAGAAAATTCTTCATGTTTGAGCAATAATAATCCTCACCTTGGAGTAGAAAGCAATGAAGGCATGGTGGATGTGGTTCGCAGGGCAAGATCCTCAAGGCAGGTCTCCACAAACAGTCAAAATCATATAAGCAACAATGTACAACTGAAAGAAGAGGAGTTGGAGCCCACCTTAAGGGGTGTGCCAGATACTTCTGACAATAGATGTCAACTTCTTCATCAAGAATGGGGATCAAGTTCAAGGATGACAGTTGGATTGAGGTCTGCAAGAAATAGAAGATCCAACTACAATGTTCAGGACAGAGGTCCAACAGAGAGGAGAAAGTCACGCCAACCTGCAATAAAAAGATCATGGTTAATGATGACGGAACATGAATGTGGTTCCCGATATATTCCCCAGCTTGGGGATGAAGTTGCATATTTGAAACAGGGTCATCAGGAGTATTTAGATCGGCCAGATCGCCCCCCAAAAGAAGTGGGGCCATGGATGAGAATGAACATAAGAGCTGTGGAATTTTGTAAAGTAGTTGAGCTCAAGTATTCAACATTGTCTGGATCGGGGGATAGTAGCTGTATAATGAACCTCGAGTTTATAGATCCTATCTCTGATGTTTGTGGTAAATCCTTTAAATTGACTTTGACCGAAATGACTAGTTTTGCAGACTTTCTTGTGGAAAAAAATAGATACGAGGCTTCTGTTCAGAGGAAGTGGACAAGCAGGAATAAGTGCAAAGTGTGGTGGAAAAATGAGGGTGAAGAAGATGGTAGTTGGTGGCATGGCCGGGTGGTAAATGTACAGCCAAAATCTTCTGAATTCCCTGATAGTCCTTGGGAAATATACACAATACGGTATTACAAGGGTGATCCTCCTGCAACAATTTCTCATAGTCCGTGGGAGCTTTATGATGATGACACCCAGTGGGAACAGCCTCATATTGATGATGAGACCAAAGCTGAGCTACTTTCTGCCTTCAACAAGCTAGAGGAATCAGCTACTCAAAGCAAGGATTCTCCTGGGGTTGAAGATTTCAGGCGCATCTCAAAAATGGAAAAATTTAGGAACAGGTTTCCAGTTCCGTTGTCTCTGGAAATGATCCAGGCAAGGCTGGAGAACGATTACTATCGAAGTTTGGAAGCTCTGGAGCATGACATGAATGTTATGCTATCAAATTTTGAGTCCCATATAGTTAAGAACGAGAAAAAACTGTTGAGAAAAATAAAACGCCTCTCAGATTGGTGGGATCTGACACTGACCTCTTTACAGCGTAACGAGGATTGTAGAGAAGGCAGTAGCCATTGA 5295 43.31 MHYGFWELGLQNCRIASRIFWGTPLDNDIMTNSEGFVRNMPLRKFVPSGDAPSISRKHISFPMKLYRESQLLEPGTNHAVEPDVEIDIREVYFLIMHFLASGPCHRTSEQLRNELLEHQLLPKRYHAWYSRNGQCSGDDHDDGLSFPLSYNKLVERYPHIGADHLIVLMKQLILHKYPPSPGMRSGNAPNAADIPTLLGTGSFSLIGNDREEGITEANRPPAYMRWPHMKADQVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNVKKLRGHRNAVYCAIFDRLGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFIIRVWRLPDGQPIAVLRGHSGAVTAIAFSPRLGYQLLSSSDDGTCRMWDLRNSSQHAARIYIPRPSDAVAGRNSGPSSSTVPQGHQIFCCSFNANGTIFVTGSSDTLARVWSACKPNSENSDQPIHEIDVLAGHENDVNYVQFSGCAVASRFTAAEKEVNVHKPKNMWFNHDNIVTCSRDGSAIIWVPRSRRSHGKGGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTDSTYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGTPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIHDTHGSVIDRETQLTPYNRNMQDLLCDSGMIPYPEPYQSTYQQRRLGALRIEWKPSSLRLSVGPDFSLDQDHQMLPLVDLDMLLSNPLPEILDVMDWEPENEVQSHDTDSEYNVIEDDFSGGEPGSLISNSSVDPEGSDEETGVEDQTVSLRRSKRKQRKGDIEIMSSSGRRVKRRNLEECDGNSVRDNRPRNPRAGHKHSKKKSKSKTFRPRRAAARNALHLFSKITGTSTDGEDEDGSGLDLSESESSLQDSDIETDESEKSLQNTARHLKGKEVVLDETEDVNAANKRLILKFPSRFSTKHLHPVSAMNYCSNPNEAVGSSSEARCEAIEANHCQTKLLNPEYSFGQANAPARAGELLDDVEGNLCLSEANQNGNIRWGGSRARTAKRLRMGETFSSGTHTRSSVCLDGDIHGHLQPENKCTAVSPQSKIQGYGAEMGTVALTDTNDKGASPLEGFPVVANGENPTCSSDIGGNGASSKVEFTGPFDTTSASIQKPICDDVIPTPTKIRLNDTAMDPEITKYEMNSLPENSTGNFSSLPERSSHLLVTQDDRINRNNSDNRNDGSPESKILIDKKYLSTSQGSTELDRPMDKMYSAVYRRTRSHKGRTNLEGGIDIGENSSCLSNNNPHLGVESNEGMVDVVRRARSSRQVSTNSQNHISNNVQLKEEELEPTLRGVPDTSDNRCQLLHQEWGSSSRMTVGLRSARNRRSNYNVQDRGPTERRKSRQPAIKRSWLMMTEHECGSRYIPQLGDEVAYLKQGHQEYLDRPDRPPKEVGPWMRMNIRAVEFCKVVELKYSTLSGSGDSSCIMNLEFIDPISDVCGKSFKLTLTEMTSFADFLVEKNRYEASVQRKWTSRNKCKVWWKNEGEEDGSWWHGRVVNVQPKSSEFPDSPWEIYTIRYYKGDPPATISHSPWELYDDDTQWEQPHIDDETKAELLSAFNKLEESATQSKDSPGVEDFRRISKMEKFRNRFPVPLSLEMIQARLENDYYRSLEALEHDMNVMLSNFESHIVKNEKKLLRKIKRLSDWWDLTLTSLQRNEDCREGSSH 1764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 448722 459294 + Conep07aG0010600.1 Cone7ag0105 440701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 814 982 - -
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 1263 1290 - -
Cone7ag0105 1764 FunFam WD40 domain-containing protein 422 502 - -
Cone7ag0105 1764 SUPERFAMILY Bromodomain 1687 1724 IPR036427 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam WD domain, G-beta repeat 608 647 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam WD domain, G-beta repeat 316 351 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam WD domain, G-beta repeat 356 395 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam WD domain, G-beta repeat 428 458 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam WD domain, G-beta repeat 274 310 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 858 905 - -
Cone7ag0105 1764 Gene3D - 1643 1763 IPR036427 GO:0005515(InterPro)
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 313 - -
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 906 928 - -
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 1419 1444 - -
Cone7ag0105 1764 Gene3D - 425 559 IPR015943 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 420 458 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 313 352 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 271 310 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 470 533 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 607 647 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 566 604 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 SMART WD40_4 355 395 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 MobiDBLite consensus disorder prediction 1263 1281 - -
Cone7ag0105 1764 SUPERFAMILY WD40 repeat-like 269 690 IPR036322 GO:0005515(InterPro)
Cone7ag0105 1764 Gene3D - 569 703 IPR015943 GO:0005515(InterPro)
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 398 - -
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 FunFam PH-interacting protein isoform X1 507 705 - -
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 656 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Gene3D - 247 424 IPR015943 GO:0005515(InterPro)
Cone7ag0105 1764 PANTHER WD REPEAT DOMAIN 9 82 1745 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 458 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 404 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 FunFam PH-interacting protein isoform X1 253 421 - -
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515(InterPro)
Cone7ag0105 1764 Pfam Bromodomain 1673 1722 IPR001487 GO:0005515(InterPro)
Cone7ag0105 1764 CDD Bromo_WDR9_I_like 1624 1752 - -
Cone7ag0105 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 353 - -
Cone7ag0105 1764 ProSitePatterns Trp-Asp (WD) repeats signature. 634 648 IPR019775 -
Cone7ag0105 1764 CDD WD40 274 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0105 K11797 - - csv:101214610 2019.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0690 Cone-Chr11:4691851 Cone7ag0105 Cone-Chr7:448722 0 dispersed
Cone18ag0743 Cone-Chr18:4066636 Cone7ag0105 Cone-Chr7:448722 3.97E-55 dispersed
Cone18ag0742 Cone-Chr18:4057900 Cone7ag0105 Cone-Chr7:448722 4.86E-80 wgd
Cone4ag0108 Cone-Chr4:516332 Cone7ag0105 Cone-Chr7:448722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41