Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0111 ATGAGAGGGCCTACTCCGTCGTCTTCCAGAGCTGCAACCGTTCTCAAGAATCTACCCCAACAAGCTTACGCTCAGATTAATCTTCATATCGAAACATCTTCCAAGAACATTTCTTCTAAACCTTCTAACGACAACACAAAAGCCACTCAAAGAGGTAACCTTTCTACACCAACCTCTCACGTCAAAGATCCGAATTCACTTCCGCTTCCCAAGCCTCCCATTATTTCTGATAAGCACCATATCTCTGCTAACCAAATCAACCATTCATACGTTTCTAGGATTCTTTCGAGCAGGGACTGCTTTTTATTACTAAATCACGAGCTCAAGGCGAAGAGGATATTTCTGAATTCTCAATCTGTCGTTAGCATCTTGCAAAACCAAGAAAACCCATTACACCCTTTGAGATTTTATATCTGGGTTTCCAATGTCAACCCGTTATTCGCAAAGAATCAAGCTGTACGAGGTGTCTTGGCCAACATATTTTATCGAAAGGGTCCGGTTGTTTTGTCTGTTCAACTGCTTCAGGAAATTAAAGCTTCTGGATTTCTAGTCACGGAAGAATTACTCTGCATATTGATTGGCAGCTGGGGAAGATTGGGTTTGGCTCAATACTGTGCTGAAGTATTTGGTCAAGTTTCATTTTTGGGTCTGAAGACCAGCACCAGATTGTACAATGCGGTGATCGATGCGTTAGTGAAGTCAAATTCTCTAGACTTGGCTTACTTGAAATTCCAACAGATGCCCGCAGATAATTGCATTCCTGATAGGTTTACTTACAACATACTCATCCATGGAGTTTGTAGACTGGGTATAGTGGATGAAGCTCTTCGTTTAATCAAACAGATGGAGAGCTTAGGATATCCACCTAATGTGTTTACATATACAATCTTAATTGATGGGTTCTGTAATTCCAACAAGGTTGATGAAGCATTTGGGCTCTTACAGAAGATGAAGGAGAGGAACGTTATTCCAAATGCAGCAACTGTTAGATCCTTGGTTCATGGAGCTTTTCGTTGCATGGATTCCGGTAAGGCTTTTGAGTTGCTGTTATTGGAATTTGTGCACAAGAAAAAGCGTACTGTGTCGAAATTAGCTTGTGATACTATACTCTATTGCCTTTCTAATAGTTCTATGGCAAGTGAGGCTGCCTTGATTTTGAGACAAACTGAGGACAAAGGTTATCTTCCTGATTGTTCAACGTTTGATATAGCTATGGCATGTATGATAAAAAAGCTAGATCTGAATGAGACATGTGATATTTTTGCGAGTTTCATACGAAGAGGTGTTAAACCAGGTTTGAGTACGTATCTTGCTCTGCTTGAAGCAGTGTTCAAGGCAGGGAGAAACGAGGAGGGAAATCAGATTTTGGATCGAATGTTCAAGGGTGGACTTGTTTCCAGTATATATTCATATAACATGGTCATAGATTGCCTATGCAAAGCCAAAGTGATTGACAAAGCAGTAGAAATATTTAATAATCTGGAGACTAGAGGTATTAGTCCTAATGTTGTTACTTTCAATACACTTATTGGTGGACATTGCAAAATTGGGGATGTAGCTAAAGCACGAGAAGGACTCAAGATGTTATTAGAGCATGGATTTAAACCAGATATCTTCACATTCAACTCGATAATTGATGGACTTTGTAGAGCAAACCAGATTGATGATGCTTTTAATTGTTTCTCTGAAATGGTTAAGTGGGATGTTAGTCCAAATGCTGTTACTTATAATATACTGATCCATTCATTCTGTGCTAGGGGAGATATCACTAGGGCCATGAGATTTTTAAGAAAAATGCAAGGAGAAGGTCTAACCCCAGATACTTTATGTTTCAATTCGCTCATCTTAAGTTTCTGCCGCATGAATAAGATCGAGAAAGCAGAGAAGCTCTTTGTTTCCATGAGGAAGATGGGGTTGAATCCCGACAATTATACATACGGTGCTTTCATCAAGGCGTTCTGTGAATCGGGAAAAGTTTCAGAAGCTAAGGAGATGTTTCTGTCTATGGAAGGAAACGGCTGTTGTCCGGATAGTTTCACTTGTAATCTGATTCTGGACTCTCTACTCAAGAAGGATCGATTGGATGAAGCTCGAGATGTGCTGAAGAGATATAGTACATTAAGCGGAGATTAG 2133 39.94 MRGPTPSSSRAATVLKNLPQQAYAQINLHIETSSKNISSKPSNDNTKATQRGNLSTPTSHVKDPNSLPLPKPPIISDKHHISANQINHSYVSRILSSRDCFLLLNHELKAKRIFLNSQSVVSILQNQENPLHPLRFYIWVSNVNPLFAKNQAVRGVLANIFYRKGPVVLSVQLLQEIKASGFLVTEELLCILIGSWGRLGLAQYCAEVFGQVSFLGLKTSTRLYNAVIDALVKSNSLDLAYLKFQQMPADNCIPDRFTYNILIHGVCRLGIVDEALRLIKQMESLGYPPNVFTYTILIDGFCNSNKVDEAFGLLQKMKERNVIPNAATVRSLVHGAFRCMDSGKAFELLLLEFVHKKKRTVSKLACDTILYCLSNSSMASEAALILRQTEDKGYLPDCSTFDIAMACMIKKLDLNETCDIFASFIRRGVKPGLSTYLALLEAVFKAGRNEEGNQILDRMFKGGLVSSIYSYNMVIDCLCKAKVIDKAVEIFNNLETRGISPNVVTFNTLIGGHCKIGDVAKAREGLKMLLEHGFKPDIFTFNSIIDGLCRANQIDDAFNCFSEMVKWDVSPNAVTYNILIHSFCARGDITRAMRFLRKMQGEGLTPDTLCFNSLILSFCRMNKIEKAEKLFVSMRKMGLNPDNYTYGAFIKAFCESGKVSEAKEMFLSMEGNGCCPDSFTCNLILDSLLKKDRLDEARDVLKRYSTLSGD 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 478247 480441 + Conep07aG0011200.1 Cone7ag0111 440707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0111 710 Pfam PPR repeat 224 252 IPR002885 -
Cone7ag0111 710 Pfam PPR repeat 679 703 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 504 538 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 539 573 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 469 503 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 257 291 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 644 678 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 574 608 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 223 255 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 292 326 IPR002885 -
Cone7ag0111 710 NCBIfam pentatricopeptide repeat 610 642 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 351 494 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 Pfam PPR repeat family 606 654 IPR002885 -
Cone7ag0111 710 Pfam PPR repeat family 467 515 IPR002885 -
Cone7ag0111 710 Pfam PPR repeat family 536 584 IPR002885 -
Cone7ag0111 710 Pfam PPR repeat family 257 303 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Cone7ag0111 710 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 363 607 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cone7ag0111 710 MobiDBLite consensus disorder prediction 32 70 - -
Cone7ag0111 710 MobiDBLite consensus disorder prediction 32 63 - -
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 161 282 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 569 636 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 637 707 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 283 350 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 Gene3D Tetratricopeptide repeat domain 495 568 IPR011990 GO:0005515(InterPro)
Cone7ag0111 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0111 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008186 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 3 1 0 35