Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0118 ATGGCTATAAGTTTGGCTATAAGTTACTTCTTCAACCTCTTCACTTCGTGCCTTCCTCTCTCAGCAATATCTGATTCGGTGTCTCAGCAAACTGAAGCTCCACCTCCCGCCGCCGATTCCTGCAATGGCATCTTCATATCTTACTCATACACCGATGGGAAACTGATCGCACCTAATCTCAAGTCCGATCTAACTAAACAGCCCTACCGATTCGAATCTGTTCTTACTGTTCTCAACAACGGGGCTGACGAGCTCCAATACTTGGTCTCTGCTTCTAATGCCGTGCTTACTGATGGGACATCCATCCCTGGTGGCGTTGGGAACGGAACTGTTTTCGCCGGATACCCGGCGACCGACCTCAAGACAGCGATTGAGACTGCGGGTGACTTGACCCAGATGGAGGTTCAGGTCAATTTGATTGGGACCCAGTTTGGTGTGGCCCCACCTGCCGTTCCGATGCCGTCGAATATATCACTGGCTAATGATGGGTTTGTCTGTCCTAAACCAACTATGCAAGGGACACGGGAAATGGAAGTGTGTTGCACTCAAGATCCAAACGTCAAAACAAACATAACTGTCACCAAGGAGTTCTTACCGCGTGGGACTGGTGATCTTACCATCATGTATGATGTGACAAAAACATATGATTCTAGTTACTCTGCCCAGGTCACCATCTCTAACCACAACACTCTAGGCCATCTTGATAATTGGAGATTAGGCTGGGAATGGATGAGGGATGAATTCATCTTCTCAATGAAAGGAGCATATCCATCTATTGTTGATTCTTCAGACTGCATATTTGGCCGACAAGGAACACACTATCAGGCCCTAGACTTTTCAACCGTTTTGAATTGTGAAAGAACACCTACCATCATTTGA 879 46.87 MAISLAISYFFNLFTSCLPLSAISDSVSQQTEAPPPAADSCNGIFISYSYTDGKLIAPNLKSDLTKQPYRFESVLTVLNNGADELQYLVSASNAVLTDGTSIPGGVGNGTVFAGYPATDLKTAIETAGDLTQMEVQVNLIGTQFGVAPPAVPMPSNISLANDGFVCPKPTMQGTREMEVCCTQDPNVKTNITVTKEFLPRGTGDLTIMYDVTKTYDSSYSAQVTISNHNTLGHLDNWRLGWEWMRDEFIFSMKGAYPSIVDSSDCIFGRQGTHYQALDFSTVLNCERTPTII 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 502059 503566 + Conep07aG0011900.1 Cone7ag0118 440714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0118 292 Pfam COBRA-like protein 219 292 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone7ag0118 292 PANTHER COBRA-LIKE PROTEIN 7 11 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0118 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0084 Cone-Chr6:406711 Cone7ag0118 Cone-Chr7:502059 1.58E-86 dispersed
Cone15ag0747 Cone-Chr15:4342724 Cone7ag0118 Cone-Chr7:502059 6.23E-134 wgd
Cone4ag0122 Cone-Chr4:572363 Cone7ag0118 Cone-Chr7:502059 4.42E-178 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0037 . 50 452 COBRA Gene Family AT5G60920 81.2 5.2e-212 734.2
Cone13ag0029 . 50 458 COBRA Gene Family AT5G60920 80.0 1.5e-211 732.6
Cone2ag0494 . 27 416 COBRA Gene Family AT5G60920 73.2 1.3e-183 639.8
Cone11ag0355 . 36 436 COBRA Gene Family AT5G60920 68.6 3.8e-178 621.7
Cone13ag0028 . 38 415 COBRA Gene Family AT5G60920 69.6 2.2e-173 605.9
Cone3ag0918 . 15 398 COBRA Gene Family AT5G60920 52.9 2.2e-125 446.4
Cone3ag1493 . 50 215 COBRA Gene Family AT5G60920 75.4 2.8e-80 296.6
Cone16ag0514 . 20 139 COBRA Gene Family AT5G60920 62.5 1.3e-40 164.9
Cone19ag0037 . 19 443 COBRA Gene Family AT3G02210 76.6 1.2e-209 726.5
Cone13ag0029 . 19 441 COBRA Gene Family AT3G02210 75.5 1.9e-207 719.2
Cone2ag0494 . 27 395 COBRA Gene Family AT3G02210 75.6 9.0e-181 630.6
Cone11ag0355 . 12 439 COBRA Gene Family AT3G02210 66.0 9.3e-178 620.5
Cone13ag0028 . 15 436 COBRA Gene Family AT3G02210 65.3 5.1e-176 614.8
Cone3ag0918 . 2 421 COBRA Gene Family AT3G02210 53.5 2.7e-132 469.5
Cone18ag1145 . 28 368 COBRA Gene Family AT3G02210 50.2 2.7e-108 389.8
Cone3ag1493 . 20 215 COBRA Gene Family AT3G02210 69.8 7.9e-84 308.5
Cone16ag0514 . 20 120 COBRA Gene Family AT3G02210 72.3 5.2e-43 172.9
Cone13ag0029 . 18 455 COBRA Gene Family AT3G29810 74.1 1.1e-207 719.9
Cone19ag0037 . 18 441 COBRA Gene Family AT3G29810 76.5 1.4e-207 719.5
Cone2ag0494 . 27 412 COBRA Gene Family AT3G29810 71.5 8.8e-181 630.6
Cone11ag0355 . 24 437 COBRA Gene Family AT3G29810 65.8 5.5e-175 611.3
Cone13ag0028 . 21 417 COBRA Gene Family AT3G29810 64.5 2.0e-169 592.8
Cone3ag0918 . 2 422 COBRA Gene Family AT3G29810 53.8 5.2e-133 471.9
Cone3ag1493 . 20 215 COBRA Gene Family AT3G29810 69.6 2.9e-83 306.6
Cone16ag0514 . 20 135 COBRA Gene Family AT3G29810 62.9 3.6e-41 166.8
Cone11ag0355 . 14 344 COBRA Gene Family AT5G15630 83.7 3.2e-178 621.7
Cone13ag0028 . 18 346 COBRA Gene Family AT5G15630 83.3 1.7e-176 615.9
Cone19ag0037 . 33 358 COBRA Gene Family AT5G15630 74.2 1.1e-151 533.5
Cone13ag0029 . 38 358 COBRA Gene Family AT5G15630 73.8 8.1e-150 527.3
Cone2ag0494 . 27 321 COBRA Gene Family AT5G15630 67.1 9.7e-127 450.7
Cone18ag1145 . 32 307 COBRA Gene Family AT5G15630 57.4 2.7e-105 379.4
Cone3ag0918 . 3 330 COBRA Gene Family AT5G15630 50.2 4.7e-97 352.1
Cone3ag1493 . 20 215 COBRA Gene Family AT5G15630 69.3 1.8e-80 297.0
Cone13ag0029 . 21 226 COBRA Gene Family AT5G60950 57.3 1.3e-65 246.9
Cone19ag0037 . 21 226 COBRA Gene Family AT5G60950 57.3 1.1e-64 243.8
Cone11ag0355 . 11 212 COBRA Gene Family AT5G60950 55.4 1.2e-58 223.8
Cone3ag1493 . 21 215 COBRA Gene Family AT5G60950 54.0 1.5e-58 223.4
Cone13ag0028 . 12 214 COBRA Gene Family AT5G60950 53.9 6.3e-57 218.0
Cone2ag0494 . 27 189 COBRA Gene Family AT5G60950 59.5 6.1e-52 201.4
Cone3ag0918 . 3 402 COBRA Gene Family AT1G09790 58.0 9.6e-143 504.2
Cone19ag0037 . 21 432 COBRA Gene Family AT1G09790 54.4 3.3e-135 479.2
Cone13ag0029 . 21 432 COBRA Gene Family AT1G09790 54.0 1.6e-134 476.9
Cone11ag0355 . 3 418 COBRA Gene Family AT1G09790 50.8 9.0e-133 471.1
Cone13ag0028 . 15 417 COBRA Gene Family AT1G09790 51.7 2.1e-129 459.9
Cone2ag0494 . 29 391 COBRA Gene Family AT1G09790 56.8 1.0e-128 457.6
Cone4ag0122 . 5 628 COBRA Gene Family AT4G16120 66.0 3.1e-254 875.2
Cone15ag0747 . 33 657 COBRA Gene Family AT4G16120 64.5 1.6e-250 862.8
Cone6ag0084 . 57 649 COBRA Gene Family AT4G16120 52.7 6.5e-204 708.0
Cone16ag0165 . 55 648 COBRA Gene Family AT4G16120 51.7 1.1e-200 697.2
Cone14ag1126 . 28 621 COBRA Gene Family AT4G16120 53.9 9.7e-200 694.1
Cone7ag0118 . 38 292 COBRA Gene Family AT4G16120 61.0 2.7e-93 340.5
Cone7ag0119 . 42 209 COBRA Gene Family AT4G16120 63.7 4.1e-65 246.9
Cone4ag0122 . 11 634 COBRA Gene Family AT3G16860 64.2 2.2e-244 842.4
Cone15ag0747 . 1 636 COBRA Gene Family AT3G16860 60.5 9.8e-237 817.0
Cone6ag0084 . 45 667 COBRA Gene Family AT3G16860 50.5 9.3e-195 677.6
Cone16ag0165 . 45 658 COBRA Gene Family AT3G16860 50.2 3.5e-194 675.6
Cone14ag1126 . 5 617 COBRA Gene Family AT3G16860 51.3 1.5e-192 670.2
Cone7ag0118 . 28 292 COBRA Gene Family AT3G16860 60.7 8.4e-95 345.5
Cone7ag0119 . 42 210 COBRA Gene Family AT3G16860 61.5 3.2e-62 237.3
Cone4ag0122 . 15 653 COBRA Gene Family AT5G49270 60.1 1.6e-239 826.2
Cone15ag0747 . 6 646 COBRA Gene Family AT5G49270 59.0 1.1e-230 797.0
Cone14ag1126 . 24 642 COBRA Gene Family AT5G49270 50.9 4.7e-194 675.2
Cone7ag0118 . 33 292 COBRA Gene Family AT5G49270 55.9 3.5e-88 323.6
Cone7ag0119 . 33 222 COBRA Gene Family AT5G49270 56.6 1.9e-57 221.5
Cone6ag0084 . 48 671 COBRA Gene Family AT3G20580 59.4 2.7e-237 818.9
Cone14ag1126 . 1 644 COBRA Gene Family AT3G20580 59.4 2.3e-236 815.8
Cone16ag0165 . 5 667 COBRA Gene Family AT3G20580 56.5 3.6e-234 808.5
Cone4ag0122 . 31 649 COBRA Gene Family AT3G20580 53.3 9.5e-203 704.1
Cone15ag0747 . 29 658 COBRA Gene Family AT3G20580 52.4 2.4e-198 689.5
Cone7ag0119 . 28 229 COBRA Gene Family AT3G20580 53.9 8.7e-63 239.2
Cone6ag1076 . 1 192 COBRA Gene Family AT3G20580 50.9 2.1e-56 218.0
Cone14ag1126 . 11 645 COBRA Gene Family AT4G27110 60.2 2.6e-232 802.4
Cone6ag0084 . 8 671 COBRA Gene Family AT4G27110 55.4 3.0e-225 778.9
Cone16ag0165 . 35 671 COBRA Gene Family AT4G27110 56.7 1.1e-222 770.4
Cone4ag0122 . 26 649 COBRA Gene Family AT4G27110 51.1 1.2e-194 677.2
Cone6ag1076 . 2 191 COBRA Gene Family AT4G27110 54.2 2.0e-59 228.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005453 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40