Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0120 ATGAATTTGATCAGTTCCTGTAAGGAATCGATGATGTCACTGGCAAGTTCAAGTGCCTGTCGGGTAGCCAGCGAGGTTGTCCCCTACCAGTTTCCGGCGGGTCTACGAGTCCTTGTTGTAGATGATGATCGACCCACTCTTCTGATCTTGGACAAGATGCTTCGTACCTGCCTCTATGATGTGAGAACATGTAATAGAGCAGAGGAGGCATTGTCTCTACTTCGAGGCAACAAAAACGGGTTTGACATCGTTCTAAGTGATGTCCACATGCCCGATATGGATGGATTCAAGCTCCTCGAGCATATCGGTCTAGAGATGGAATTACCTGTTATCATGATGTCTATGGATGCCGGGAAAGACGTGGTTATGAAGGGGATTACTCACGGTGCTTGTGATTATTTGATAAAACCCGTCTCGCTTGAGGCTTTGAAGAACATATGGCAGCATGTAGTTCGGAAGAAGAAGAATGAGTGGAAGGACTTGGATCAACTTGCAAGTGCAGATGAATATGGAGATTGGCAACAAAAACTAATTGGAGATGTGGATTATTCATCCTCTGCAAATGAAGGAAGTTGCAGAAGTGCAAAGAGGAGGAAGGTCGATGAAGAAGAGGCCGAGGACAAGGACGACTCCTCTGCATTGAAAAAGCCGAGGGTAGTTTGGTCAGTTGAGCTGCATCAACAGTTTGTAGACGCTGTGAATCAACTAGGCATTGACAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGGACGTTCCGGGACTAACTCGAGAAAATGTTGCAAGTCATCTTCAGAAATATCGGCTCTATCTTAGAAGGCTAAGTGGAGGTTCTTCACATCATCAGAATAATTTGGCCAACTCTTTCCTCAACCCACAAGAAGCAGCTCTCGGATCGATCTCATCCCTCAACGGATTTCACCTTCACTCTCTTCCAGTTACCAGCCAAATGCAAGCACAAAGTGTAGTCGCGCCAAATCCAGGCATGTCTACTATATCTGTTGCCAATCAGAGGAACCTCTTTACCTTTGAAAATCCAAAGCTAAATCCGAACATGTCTAAACCAATAAATTTACTTCACGGAATCTCAACAACTTTGGGTTCAAAAAATCTTACGAATTTCCACCATTCTACACAATCTCATGGAAGCATGATAACCCAGATGCCTCAACCACAGTCTAGTGCACATATTTTCAACAAAACTACTAGCATTAACTCTAATATACAAAGGCTTCCCTCATCTATAGGGCATCCAATTTTCTCAAACGGGATTGCTAATGGCGGTGTTGCGACGACAAACAGGGCAGGATTTAGTCTAGTTCCATCTACCTCATCGATTTTAAATTCGGGCGTAAGTCATCAAATTGTAGAACTTCCTGGTAATAGTTTTCCCCTTCAAAGTACTCCTTTAGAGATGCCCACTCTCACACCAAAAAGAGGTTTCGCACAAGAGTTATCACCAAACTCGGATGTCAAAGGGTCCGGAGGATTCTTTCAAAGTTATGATGTGTTTAGTGGTTTGACTCTGCAGAACTCAAATGATTGGGACTTGCATTATAATATAGGCTTGAGTTTTGATGCCTCTCGAAACTTGAACCGGATTAGACCTAGCCTCGATGTTTCATCATCGGGTTTAGTTCATCAAGGCTTTTCTTCGGGCATAATTGGACCAACCACATTTGTTGGTGATAATTCAATGAGCGTAAGAGCTGAAAAAATTCTGGATTCAAGCCGTCAGATTGGTGGCATCTTAGGTGGAAACTTTGGGCAGGAAGATATTTTAAGTGCACTTCTTAAACAGCAAGAAGGCATTGGCACGGCTGAAACAGAGTTCGACTTTGATGGGATATGCATTGATAATATTCCTGTTTAA 1872 43.11 MNLISSCKESMMSLASSSACRVASEVVPYQFPAGLRVLVVDDDRPTLLILDKMLRTCLYDVRTCNRAEEALSLLRGNKNGFDIVLSDVHMPDMDGFKLLEHIGLEMELPVIMMSMDAGKDVVMKGITHGACDYLIKPVSLEALKNIWQHVVRKKKNEWKDLDQLASADEYGDWQQKLIGDVDYSSSANEGSCRSAKRRKVDEEEAEDKDDSSALKKPRVVWSVELHQQFVDAVNQLGIDKAVPKKILELMDVPGLTRENVASHLQKYRLYLRRLSGGSSHHQNNLANSFLNPQEAALGSISSLNGFHLHSLPVTSQMQAQSVVAPNPGMSTISVANQRNLFTFENPKLNPNMSKPINLLHGISTTLGSKNLTNFHHSTQSHGSMITQMPQPQSSAHIFNKTTSINSNIQRLPSSIGHPIFSNGIANGGVATTNRAGFSLVPSTSSILNSGVSHQIVELPGNSFPLQSTPLEMPTLTPKRGFAQELSPNSDVKGSGGFFQSYDVFSGLTLQNSNDWDLHYNIGLSFDASRNLNRIRPSLDVSSSGLVHQGFSSGIIGPTTFVGDNSMSVRAEKILDSSRQIGGILGGNFGQEDILSALLKQQEGIGTAETEFDFDGICIDNIPV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 505034 507994 - Conep07aG0012100.1 Cone7ag0120 440716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0120 623 MobiDBLite consensus disorder prediction 192 211 - -
Cone7ag0120 623 Gene3D - 213 275 - -
Cone7ag0120 623 Gene3D - 35 167 - -
Cone7ag0120 623 SMART REC_2 35 147 IPR001789 GO:0000160(InterPro)
Cone7ag0120 623 CDD REC_typeB_ARR-like 37 151 - -
Cone7ag0120 623 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 333 IPR045279 GO:0009736(InterPro)
Cone7ag0120 623 Pfam Myb-like DNA-binding domain 218 268 IPR001005 -
Cone7ag0120 623 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160(InterPro)
Cone7ag0120 623 SUPERFAMILY Homeodomain-like 214 273 IPR009057 -
Cone7ag0120 623 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160(InterPro)
Cone7ag0120 623 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 269 IPR006447 GO:0003677(InterPro)
Cone7ag0120 623 FunFam Two-component response regulator 212 275 - -
Cone7ag0120 623 SUPERFAMILY CheY-like 34 158 IPR011006 -
Cone7ag0120 623 MobiDBLite consensus disorder prediction 184 211 - -
Cone7ag0120 623 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 215 272 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1755 Cone-Chr4:12894931 Cone7ag0120 Cone-Chr7:505034 1.48E-84 dispersed
Cone5ag1126 Cone-Chr5:5011016 Cone7ag0120 Cone-Chr7:505034 2.54E-21 dispersed
Cone7ag0120 Cone-Chr7:505034 Cone7ag1672 Cone-Chr7:11219297 1.00E-86 dispersed
Cone14ag0738 Cone-Chr14:4109366 Cone7ag0120 Cone-Chr7:505034 9.72E-159 wgd
Cone15ag0748 Cone-Chr15:4345184 Cone7ag0120 Cone-Chr7:505034 3.61E-164 wgd
Cone4ag0123 Cone-Chr4:575340 Cone7ag0120 Cone-Chr7:505034 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46440 PF12937 F-box-like 8.10E-08 CL0271 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0120 K14491 - rcu:8262611 642.884