Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0133 ATGGAAGGAATGGGCGGTGGCGGCGGCGGCGCTCTCTCTGTTCCAGCTGATAACAAGGACTACGTCCTAAGCGGGAAGATCATGATGTGCGCCATGGTAATCCTCTTCATCGTCATCGTTCTCATGGTCTGTCTCCATCTCTACGCGCGCTGGTATGTCCTTCGTTCTCGCCGCCCTATGCAGCTCGTCTTCTACGTCGACAACGCCGGCCACACTGTTTCGGTCCCCTCACAAGGCCTCGACGCTGCCGTCTTGAAGTCTCTTCCCGTTTTCGTTTACTCCGAAGAAACCCATCCCGATCCGATCGAATGCGCCGTCTGCTTGTCGGAATTCGAAGAGAACGAAGCGGGTCGGATCCTCCCCAAATGCAATCACAGTTTCCATATCGGCTGCATCGACATGTGGTTTCACTCTCACTCCACGTGTCCGCTGTGTCGGTCGCCGGTCGAATCTGAGTCTGTGCGCGAAAACCCGGATGAAGGGGTTCTCTCCGTCGGTACAGATGAACCGGCGAGAGATGAACCCGGTTCGAGCAACGGATTATGCTCGGAGTGTGAACAGGAAGGGCACCAGACCGGGAAGTCTCTTCCTTCCTCGTCGTTTGGGGGTAGGATGAAGCGGTTGGAGCTGGCGGGAGTGTCGATAGAGGTGCCCCGTCGGAACGAGAGTTTCGGGCGGTTTGAAAACGATTCGGGTGTTGAAACGCCGTCGTCTCAAGCGTTCAGATCGCCGGTGAGCCGTATGATGTCGTCGCTGTGGTTCAGAAGAATTATGAGTAGTAACAGGCGAGGCGGAGTTTCTCCCTCCGGAAACTCGGTGAGTTACAGTTCCGTCAACGAGTCAGATATCGAAAGGGGCCGGGATGAGATTCACTGA 876 55.94 MEGMGGGGGGALSVPADNKDYVLSGKIMMCAMVILFIVIVLMVCLHLYARWYVLRSRRPMQLVFYVDNAGHTVSVPSQGLDAAVLKSLPVFVYSEETHPDPIECAVCLSEFEENEAGRILPKCNHSFHIGCIDMWFHSHSTCPLCRSPVESESVRENPDEGVLSVGTDEPARDEPGSSNGLCSECEQEGHQTGKSLPSSSFGGRMKRLELAGVSIEVPRRNESFGRFENDSGVETPSSQAFRSPVSRMMSSLWFRRIMSSNRRGGVSPSGNSVSYSSVNESDIERGRDEIH 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 560866 562118 - Conep07aG0013400.1 Cone7ag0133 440729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0133 291 MobiDBLite consensus disorder prediction 153 202 - -
Cone7ag0133 291 CDD RING-H2_EL5-like 103 146 - -
Cone7ag0133 291 MobiDBLite consensus disorder prediction 260 291 - -
Cone7ag0133 291 MobiDBLite consensus disorder prediction 180 199 - -
Cone7ag0133 291 SMART ring_2 104 145 IPR001841 -
Cone7ag0133 291 MobiDBLite consensus disorder prediction 260 280 - -
Cone7ag0133 291 SUPERFAMILY RING/U-box 84 151 - -
Cone7ag0133 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Cone7ag0133 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 252 - -
Cone7ag0133 291 Pfam Ring finger domain 103 146 IPR001841 -
Cone7ag0133 291 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Cone7ag0133 291 FunFam RING-H2 finger protein ATL3 71 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0133 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1384 Cone-Chr10:10799301 Cone7ag0133 Cone-Chr7:560866 8.02E-29 dispersed
Cone17ag0032 Cone-Chr17:210176 Cone7ag0133 Cone-Chr7:560866 2.66E-30 dispersed
Cone4ag0060 Cone-Chr4:307367 Cone7ag0133 Cone-Chr7:560866 9.06E-29 dispersed
Cone7ag0056 Cone-Chr7:246722 Cone7ag0133 Cone-Chr7:560866 1.27E-29 dispersed
Cone7ag0133 Cone-Chr7:560866 Cone7ag0829 Cone-Chr7:6205530 3.68E-38 dispersed
Cone4ag1991 Cone-Chr4:13942427 Cone7ag0133 Cone-Chr7:560866 2.01E-17 transposed
Cone15ag0756 Cone-Chr15:4437878 Cone7ag0133 Cone-Chr7:560866 1.91E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0756 Cone7ag0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005649 5 1 1 3 3 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 39