Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag0135 ATGTACCATTGGCTGAAACTGGTGAAGGCATTGCTGAATGGGGATCTAGTGGAACAGTTTCAACCCCTTCGTGAAGTTCAGAGTGACAAAGCAACTATTGAGATAACAGGCCGTTACAAAGGAAAGGTCGCTCACTTACTTCATGTTCCTGGTGATATTGTGAAGGTTGGAGCCACTCTCTTAAGAGTGATGTTAGCTGGGGAATCTCTGGCCCCAGCACAGAGTGTTGAAGCTGTTCGGAGCCTTGCAAAGCAATATGGTATAAATATAAATGATGTCCATGGAACTGGTAGAGATGGACGAGTGCTAAAAGAAGATATCTTTAAGTACGCTGTCCAGAAAGGAGTTATAAAGGATGAAACTTCATCAAATGCTAATCTTAGAATCAATGTCCTGGATGGACCAGAAATTTACCCACATGCATCATCGGGTGAAGTTGGATTGCACTTCAGTGACAAGGCAATTCCTTTGAGAGCTATTGGTGGCTTTTCTGTAGGCTCGCACAGTATTGGAGTTGCCACAGTCCCAAATATAAAGAATGTACAGTCCCTTTCCATTCTGGAGGAACTATCAGGTGGACCGATAACTCTAAGCAATATCAGATGCATAGGTGGAAAATTTGGTTCTCCTTTACTCTTCTTACCCAAAGTCTGCATCATTGCTCTTACCCGAATTCAAAGGGTCCCATGCTTTGCAGATGATAGAGATGATGCATTATCCTGCTTCGATCATGATGTTTGCATATCTCCTCAGATAAACATAGGAGCGGACCATAGAGTATTGGACCGAGCAACAGTTGCAAGGTTTTGCAATGAGTGGAAGCGATTTAATCCGGAGCTTCTTATCATGCACATGAGGTGA 861 43.21 MYHWLKLVKALLNGDLVEQFQPLREVQSDKATIEITGRYKGKVAHLLHVPGDIVKVGATLLRVMLAGESLAPAQSVEAVRSLAKQYGININDVHGTGRDGRVLKEDIFKYAVQKGVIKDETSSNANLRINVLDGPEIYPHASSGEVGLHFSDKAIPLRAIGGFSVGSHSIGVATVPNIKNVQSLSILEELSGGPITLSNIRCIGGKFGSPLLFLPKVCIIALTRIQRVPCFADDRDDALSCFDHDVCISPQINIGADHRVLDRATVARFCNEWKRFNPELLIMHMR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 564406 566096 - Conep07aG0013600.1 Cone7ag0135 440731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag0135 286 Pfam Biotin-requiring enzyme 13 62 IPR000089 -
Cone7ag0135 286 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 74 111 IPR004167 GO:0016746(InterPro)
Cone7ag0135 286 Pfam e3 binding domain 78 107 IPR004167 GO:0016746(InterPro)
Cone7ag0135 286 SUPERFAMILY CoA-dependent acyltransferases 167 276 - -
Cone7ag0135 286 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 78 110 IPR036625 GO:0016746(InterPro)
Cone7ag0135 286 CDD lipoyl_domain 4 63 - -
Cone7ag0135 286 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 14 43 IPR003016 -
Cone7ag0135 286 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 188 285 IPR050743 GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0016407(PANTHER)|GO:0031405(PANTHER)
Cone7ag0135 286 Gene3D - 76 115 IPR036625 GO:0016746(InterPro)
Cone7ag0135 286 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 187 276 IPR001078 GO:0016746(InterPro)
Cone7ag0135 286 Gene3D - 185 280 IPR023213 -
Cone7ag0135 286 SUPERFAMILY Single hybrid motif 13 76 IPR011053 -
Cone7ag0135 286 Gene3D - 7 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag0135 K09699 - - rcu:8278755 152.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0140 Cone-Chr4:639276 Cone7ag0135 Cone-Chr7:564406 1.10E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g164 . Blo12g00385 . . . Bpe14g01123 . . . . Cma06g01515 . . . . Cpe08g00173 . . . . . . . . . . . . . . . . . Cone7ag0135 Cone4ag0140 . . . . . . . Bda13g00193 . . . . . . . . . . . . . . . . . . . . Cla05g00666 Cam05g0730 Cec05g0737 Cco05g0737 Clacu05g0723 Cmu05g0688 Cre05g0762 . Csa03g01483 Chy06g00720 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009908 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 33